AMBER: tutorial_8_section_6

From: Urszula Uciechowska <>
Date: Wed, 23 Jan 2008 18:04:38 +0100

Dear AMber users,

I am trying to do the cluster analysis with MMTSB toolset. I am using now the data from tutorial
8, my problem is that after running the clustering with command:

>kclust -mode rmsd -centroid -cdist -heavy -lsqfit \
  -radius 6 -maxerr 1 -iterate \
   ../clustfils > ../Centroid_6
the Centroid_6 file is empty. I didnt get any errors as well.
What can be wrong and how could I solve it?

Thank you in advance for any advices

Best Regards,
Urszula Uciechowska

MSc.PhD Student
Medicinal Chemistry Group
University of Halle-Wittenberg
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Received on Sun Jan 27 2008 - 06:07:07 PST
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