Lili,
You can measure distances between atoms by pressing 2 (or going on the menu Mouse, Label, Atom (2) ) , and then clicking on two atoms. The distance will show as text in the middle. Hope that helps.
Sincerely,
Keith Van Nostrand
Lili Peng <lpeng.ucsd.edu> wrote:
Hi,
I have a question regarding using VMD. Does anyone know how to calculate end-to-end distance in VMD from a PDB file? Currently I do not have a topology or trajectory file, only the PDB.
Thanks in advance,
Lili
---------------------------------
Looking for last minute shopping deals? Find them fast with Yahoo! Search.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jan 16 2008 - 06:07:22 PST
