All: what Francesco is trying to ask (I think) is that since he HAS a
licensed version of amber9, but RAMD works with amber 8 only (for
reasons that escape me, it should be an almost trivial change in code),
can he GET a version of amber 8 without paying again ?.
Francesco, if this is what you want to do, just email me and we try to
figure it out.
Adrian
Robert Duke wrote:
> Well, Rebecca Wade does have a patch for 8, and it is on OUR web page (amber.scripps.edu; do a find on wade); maybe that's not quite standard amber, but it is some level of endorsement I would think... ;-)
> Regards - Bob Duke
> ----- Original Message -----
> From: Carlos Simmerling
> To: amber.scripps.edu
> Sent: Saturday, January 05, 2008 11:46 AM
> Subject: Re: AMBER: About RAMD
>
>
> I don't think that method ever made it to standard Amber.
> you will need to ask the author for the code, although I am
> not sure if she is allowed to distribute it or not.
>
> you can certainly install more than one version of Amber
> on the same machine. just check your path settings when
> you try to run a simulation.
>
>
> On Jan 5, 2008 11:26 AM, Francesco Pietra <chiendarret.yahoo.com > wrote:
>
> RAMD = Random Acceleration Molecular Dynamics
> http://projects.villa-bosch.de/mcm/software/amber
> Cheers
> francesco
>
>
> --- Carlos Simmerling <carlos.simmerling.gmail.com > wrote:
>
> > what is RAMD? do you mean REMD? if so, that is available
> > in Amber9.
> >
> >
> > On Jan 5, 2008 5:39 AM, Francesco Pietra <chiendarret.yahoo.com > wrote:
> >
> > > I was just informed from Professor Wade that RAMD at the moment can only
> > > be
> > > implemented into Amber 8.
> > >
> > > As I am most curious to try to follow the path of a ligand out of a
> > > protein
> > > embedded in a membrane, is it possible to get Amber 8 (having a personal
> > > license for Amber 9) and temporarily, for that computation, install it on
> > > the
> > > same machine (dual opterons, shared memory) without unistalling Amber 9?
> > > Amber
> > > 9 was ifort/icc compiled, parallel support from OpenMPI 1.2.3.
> > >
> > > Thanks
> > >
> > > francesco pietra
> > >
> > >
> > >
> > >
> >
> ____________________________________________________________________________________
> > > Be a better friend, newshound, and
> > > know-it-all with Yahoo! Mobile. Try it now.
> > > http://mobile.yahoo.com/;_ylt=Ahu06i62sR8HDtDypao8Wcj9tAcJ
> > >
> > > -----------------------------------------------------------------------
> > > The AMBER Mail Reflector
> > > To post, send mail to amber.scripps.edu
> > > To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
> > >
> >
> >
> >
--
Dr. Adrian E. Roitberg
Associate Professor
Quantum Theory Project and Department of Chemistry
University of Florida PHONE 352 392-6972
P.O. Box 118435 FAX 352 392-8722
Gainesville, FL 32611-8435 Email adrian.qtp.ufl.edu
============================================================================
To announce that there must be no criticism of the president,
or that we are to stand by the president right or wrong,
is not only unpatriotic and servile, but is morally treasonable
to the American public."
-- Theodore Roosevelt
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Jan 06 2008 - 06:07:08 PST
