Hi Jani,
Are you using PME? If so, this has been discussed earlier. I would
therefore recommend reading this thread:
http://archive.ambermd.org/200712/0203.html
and/or search for "PME and counter ions" like this in google and
you'll get the whole thread:
site:archive.ambermd.org amber "PME and counter ions"
Good luck. :-)
Lars Skjærven
On Jan 14, 2008 12:43 PM, jani sahil <genomejani.gmail.com> wrote:
> Hello
> I am new to amber and i want to simulate an acid protease
> for which i need to neutralize the structure. I need to neutralize without
> adding any ions
> is their any way to do this
> Thanks in advance
> Regards
> Jani Vinod
--
mvh Lars Skjærven
Institutt for Biomedisin
Universitetet i Bergen
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Received on Wed Jan 16 2008 - 06:07:16 PST
