RAMD = Random Acceleration Molecular Dynamics
http://projects.villa-bosch.de/mcm/software/amber
Cheers
francesco
--- Carlos Simmerling <carlos.simmerling.gmail.com> wrote:
> what is RAMD? do you mean REMD? if so, that is available
> in Amber9.
>
>
> On Jan 5, 2008 5:39 AM, Francesco Pietra <chiendarret.yahoo.com> wrote:
>
> > I was just informed from Professor Wade that RAMD at the moment can only
> > be
> > implemented into Amber 8.
> >
> > As I am most curious to try to follow the path of a ligand out of a
> > protein
> > embedded in a membrane, is it possible to get Amber 8 (having a personal
> > license for Amber 9) and temporarily, for that computation, install it on
> > the
> > same machine (dual opterons, shared memory) without unistalling Amber 9?
> > Amber
> > 9 was ifort/icc compiled, parallel support from OpenMPI 1.2.3.
> >
> > Thanks
> >
> > francesco pietra
> >
> >
> >
> >
>
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>
>
>
> --
> ===================================================================
> Carlos L. Simmerling, Ph.D.
> Associate Professor Phone: (631) 632-1336
> Center for Structural Biology Fax: (631) 632-1555
> CMM Bldg, Room G80
> Stony Brook University E-mail: carlos.simmerling.gmail.com
> Stony Brook, NY 11794-5115 Web: http://comp.chem.sunysb.edu
> ===================================================================
>
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Received on Sun Jan 06 2008 - 06:07:07 PST
