AMBER: Number of Hydrogen Bonds?

From: <>
Date: Fri, 25 Jan 2008 09:07:39 +0800

Dear all,
Does anyone know how to calculate "the number of hydrogen bonds" vs.
"time" using ptraj ? As far as I know that ptraj is able to track the
interactions between a list of hydrogen bond "donors" and hydrogen
bond "acceptors" that the user specifies. However, it only reveals the
maximum occupancy and lifetimes of a particular H-bond related to the
time series when the option "series hbt" is added to the command line.
Thank you for your help!

Dr. Yi-Ming Cheng

Department of Chemistry,
National Taiwan University
personal site:
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Received on Sun Jan 27 2008 - 06:07:23 PST
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