Amber Archive May 2024 by thread
- [AMBER-Developers] Release of Amber24 and AmberTools24 David A Case via AMBER-Developers (Wed May 01 2024 - 09:16:14 PDT)
- Re: [AMBER] Interpretation of Native contacts analysis output in cpptraj Shah, Tejas V. via AMBER (Wed May 01 2024 - 13:30:37 PDT)
- [AMBER] Problems with amber24 installation Elvis Martis via AMBER (Fri May 03 2024 - 03:28:29 PDT)
- Re: [AMBER] Cpptraj vs Leap residue number overflow David A Case via AMBER (Fri May 03 2024 - 08:55:42 PDT)
- Re: [AMBER] Atom types more than 2 characters David A Case via AMBER (Fri May 03 2024 - 09:12:03 PDT)
- Re: [AMBER] Thermodynamic Integration calculation: David A Case via AMBER (Fri May 03 2024 - 09:23:16 PDT)
- [AMBER] Atom type not found for RNA Kavinda Kashi Juliyan Gunasinghe via AMBER (Fri May 03 2024 - 21:36:57 PDT)
- [AMBER] Absolute simulation box size Istvan Kolossvary via AMBER (Sat May 04 2024 - 10:29:57 PDT)
- [AMBER] NetCDF variable compression requires compiling with HDF5 support Martin Juhás via AMBER (Sun May 05 2024 - 13:41:46 PDT)
- [AMBER] Cpptraj distance for multiple copies of ligand vs protein Alexander Hung Lee via AMBER (Mon May 06 2024 - 06:46:44 PDT)
- [AMBER] Does pdb4amber take care of protonation states? Abdelrahman, Noureen via AMBER (Mon May 06 2024 - 12:35:32 PDT)
- [AMBER] Alchemical membrane simulations with the AMBER TI code William Glass via AMBER (Tue May 07 2024 - 03:06:23 PDT)
- [AMBER] Amber force fields for 5-Methylcytosine Nucleotide RNA Penumutchu, Srinivasa via AMBER (Tue May 07 2024 - 07:26:28 PDT)
- [AMBER] Problems compiling with openHPC netcdf/-fortran Martin Juhás via AMBER (Tue May 07 2024 - 07:32:52 PDT)
- Re: [AMBER] Amber22/AmberTools23: Enabling of libtorch & cudnn libraries breaks pbsa binaries Chakrabarti, Mayukh \(NIH/NCI\) \[C\] via AMBER (Tue May 07 2024 - 08:56:48 PDT)
- [AMBER] How to add new lipids into packmol-memgen for CHARMM Evan Collins via AMBER (Tue May 07 2024 - 10:53:19 PDT)
- [AMBER] Call for papers - 18th German Conference on Cheminformatics (GCC 2024) Guessregen, Stefan /DE via AMBER (Tue May 07 2024 - 15:10:46 PDT)
- [AMBER] Runtime errors when using nmropt restraints Pye, Aaron Wesley via AMBER (Thu May 09 2024 - 04:56:32 PDT)
- [AMBER] Assistance with tleap Xylia Peters via AMBER (Thu May 09 2024 - 10:07:00 PDT)
- [AMBER] printcharges using Amber24 GFN2-xtB method Niven Singh via AMBER (Thu May 09 2024 - 14:34:40 PDT)
- [AMBER] gnuplot of DCCM map Priyasha Majee via AMBER (Thu May 09 2024 - 23:11:48 PDT)
- [AMBER] Restarting constant pH replica exchange MD Dulal Mondal via AMBER (Fri May 10 2024 - 01:39:06 PDT)
- [AMBER] Errors using the ZAFF Modeling Tutorials with Center ID 4 saverio lemme via AMBER (Fri May 10 2024 - 01:43:40 PDT)
- [AMBER] Multiple types of water for SHAKE Tucker E. Burgin via AMBER (Fri May 10 2024 - 08:22:45 PDT)
- [AMBER] tleap can't distinguish two protein chains even though I used TER Abdelrahman, Noureen via AMBER (Fri May 10 2024 - 14:59:32 PDT)
- [AMBER] Regarding Advanced Thermodyanmic Integration Methods to mutate a ligand bound to a protein tutorial: Kankana Bhattacharjee via AMBER (Sat May 11 2024 - 00:16:25 PDT)
- [AMBER] Specifying a mask with scale in PARMED Ford, Baily Wayne via AMBER (Mon May 13 2024 - 09:29:20 PDT)
- [AMBER] Register Now! Amber Free Energy Workshop 2024 at SDSC/UCSD, Aug. 12-16 Darrin York via AMBER (Mon May 13 2024 - 17:18:48 PDT)
- [AMBER] Gaussian accelerated (GAMD) Question Ramdhan,Peter A via AMBER (Tue May 14 2024 - 08:18:55 PDT)
- [AMBER] Parameters for HEM residues Enrico Martinez via AMBER (Wed May 15 2024 - 02:43:04 PDT)
- [AMBER] Changed atom name in NME cap residue library Jong Young Joung via AMBER (Thu May 16 2024 - 00:23:07 PDT)
- [AMBER] Implicit solvent simulation of membrane system Enrico Martinez via AMBER (Thu May 16 2024 - 02:01:48 PDT)
- [AMBER] Fwd: bug report and gmail filtering amber digest Ross Walker via AMBER (Fri May 17 2024 - 07:10:57 PDT)
- [AMBER] bug in cpptraj from amber tools 24 related to dcd trajectories ? Vlad Cojocaru via AMBER (Fri May 17 2024 - 07:54:12 PDT)
- [AMBER] TIP 3P IONS Ramírez, Gustavo via AMBER (Fri May 17 2024 - 09:13:14 PDT)
- [AMBER] pmemd.cuda does not reflect the PLUMED-contributed potential energy for replica exchange probabilities Miroslav Krepl via AMBER (Fri May 17 2024 - 09:25:37 PDT)
- [AMBER] mcwat does not work in amber24 Juraj Dobias via AMBER (Fri May 17 2024 - 12:24:36 PDT)
- [AMBER] Regarding using two basis sets in QUICK Kriti Shukla via AMBER (Mon May 20 2024 - 04:57:17 PDT)
- [AMBER] Merge cpout files to analyze full simulation Abdelrahman, Noureen via AMBER (Mon May 20 2024 - 06:09:35 PDT)
- [AMBER] Bond not formed in tleap for DNA phosphate Vaibhav Bhatt via AMBER (Tue May 21 2024 - 02:14:10 PDT)
- [AMBER] Error in production extension Priyasha Majee via AMBER (Wed May 22 2024 - 04:31:05 PDT)
- [AMBER] Installing Amber24 in M3 Mac Marc Ciruela Jardí via AMBER (Wed May 22 2024 - 06:47:43 PDT)
- [AMBER] default lambda-sheduling in amber24 Juraj Dobias via AMBER (Thu May 23 2024 - 00:23:59 PDT)
- [AMBER] Query on ASMD vs SMD Sruthi Sudhakar via AMBER (Thu May 23 2024 - 02:07:39 PDT)
- [AMBER] easybuild for amber24 Mooers, Blaine H.M. \(HSC\) via AMBER (Thu May 23 2024 - 20:54:02 PDT)
- [AMBER] Proper way of using external OFF library files Danial Yousefi via AMBER (Fri May 24 2024 - 02:36:08 PDT)
- [AMBER] Suspicion pKa shift in Constant pH Molecular Dynamics simulation Abuhasan, Osama via AMBER (Fri May 24 2024 - 02:56:33 PDT)
- [AMBER] Regarding GIST analysis Jenny 148 via AMBER (Fri May 24 2024 - 05:34:07 PDT)
- [AMBER] License in Exxact workstation Ali Saad via AMBER (Sat May 25 2024 - 12:08:43 PDT)
- [AMBER] Regarding FE_Workflow tool : Kankana Bhattacharjee via AMBER (Mon May 27 2024 - 02:49:50 PDT)
- [AMBER] Regarding CG protein and Bilayer: Kankana Bhattacharjee via AMBER (Mon May 27 2024 - 04:56:16 PDT)
- [AMBER] Question regarding SMD simulation of ligand-receptor system Frederico Henrique Ferreira via AMBER (Mon May 27 2024 - 14:22:29 PDT)
- [AMBER] Query Regarding AMBER Advanced Thermodynamic Integration calculation: Kankana Bhattacharjee via AMBER (Mon May 27 2024 - 23:52:00 PDT)
- Re: [AMBER] Regarding Packmol-Memgen: Stephan Schott via AMBER (Tue May 28 2024 - 05:58:43 PDT)
- [AMBER] ERROR: max pairlist cutoff must be less than unit cell max sphere radius! AMANPREET KAUR via AMBER (Tue May 28 2024 - 23:12:51 PDT)
- [AMBER] Problem with ZAFF Modeling Tutorial Center ID 4 saverio lemme via AMBER (Wed May 29 2024 - 04:00:48 PDT)
- [AMBER] NMR restraints slowing down simulations Skanda Sastry via AMBER (Wed May 29 2024 - 17:04:03 PDT)
- [AMBER] Installation of AMBER-18 Kriti Shukla via AMBER (Thu May 30 2024 - 00:19:22 PDT)
- [AMBER] Quantum mechanical calculation for charge Kriti Shukla via AMBER (Fri May 31 2024 - 02:55:47 PDT)
- [AMBER] Using TCPB with Terachem in Amber Abdelrahman, Noureen via AMBER (Fri May 31 2024 - 12:34:25 PDT)
- Last message date: Fri May 31 2024 - 14:00:02 PDT
- Archived on: Fri Dec 13 2024 - 05:56:18 PST
