Dear Users,
I have been trying to simulate a RNA molecule with the PDB ID: 2miy. However, when trying to parameterize it using OL3 force-field, I encountered an error which says three of the atoms do not have a type and therefore, gives 3 errors. However, when running PDB4AMBER it did not show any of these errors. How can I resolve this? I have attached the leap.log file and the PDB file for my RNA molecule.
Thank you so much,
Kind regards,
Kavinda
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Received on Fri May 03 2024 - 22:00:02 PDT
