You could decrease the value of "cut" in &cntrl or rebuild the system with more solvent so you have a bigger box. In principle, one could alternatively reduce the value of "skinnb" in &ewald, but my advice would be to add more water so you have a larger box.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 29 2024 - 06:30:02 PDT