the warnings are fine, they are just about converted the names for the
terminal residues.
the error looks related to your Amber installation, you may want to start a
different email thread with that in the subject.
you may also consider updating your Amber version, Amber 18 is rather old
now.
On Fri, May 10, 2024 at 9:46 AM Xylia Peters <xyliapeters.yahoo.com> wrote:
> Dear Carlos,
>
> I trust you are well.
>
> The issue has indeed now resolved itself. Thank you so much! I however
> still get warnings for the N- and C- terminal residue naming (screenshot
> below). I have tried to run pdb4amber on the CHPC cluster but it keeps
> coming back with an error (screenshot 2). Do you have any advice for this
> issue?
>
> Kind regards,
> Xylia
>
>
>
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Received on Fri May 10 2024 - 07:30:02 PDT
