Amber Archive Sep 2009 by thread
473 messages
:
Starting
Wed Sep 02 2009 - 23:06:58 PDT,
Ending
Wed Sep 30 2009 - 05:30:02 PDT
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[AMBER] ACE and NME patch: VMD ???
Siddharth Rastogi
(Mon Aug 31 2009 - 17:25:47 PDT)
RE: [AMBER] ACE and NME patch: VMD ???
Ross Walker
(Tue Sep 01 2009 - 10:54:38 PDT)
Re: [AMBER] Docking with Amber
case
(Mon Aug 31 2009 - 17:58:49 PDT)
[AMBER] how to pull a dna
balaji nagarajan
(Mon Aug 31 2009 - 19:39:10 PDT)
Re: [AMBER] how to pull a dna
Sam Danziger
(Tue Sep 01 2009 - 04:17:09 PDT)
Re: [AMBER] ATP/GTP parameters
E.M.
(Mon Aug 31 2009 - 21:48:39 PDT)
Re: [AMBER] ATP/GTP parameters
wang
(Mon Aug 31 2009 - 22:02:08 PDT)
Re: [AMBER] ATP/GTP parameters
FyD
(Mon Aug 31 2009 - 23:10:41 PDT)
Re: [AMBER] problem with 4-Hydroxyl-Proline tutorial
Jia Xu
(Mon Aug 31 2009 - 22:10:50 PDT)
[AMBER] symbol lookup error
Bala subramanian
(Tue Sep 01 2009 - 01:43:51 PDT)
RE: [AMBER] symbol lookup error
Ross Walker
(Tue Sep 01 2009 - 12:42:49 PDT)
Re: [AMBER] How to derive charges from the output
bharat lakhani
(Tue Sep 01 2009 - 01:46:12 PDT)
[AMBER] How to remove Hydrogen using ptraj
Mannan
(Tue Sep 01 2009 - 03:50:44 PDT)
Re: [AMBER] How to remove Hydrogen using ptraj
Thomas Cheatham III
(Tue Sep 01 2009 - 08:55:43 PDT)
Re: [AMBER] How to remove Hydrogen using ptraj
case
(Tue Sep 01 2009 - 10:19:51 PDT)
Re: [AMBER] How to remove Hydrogen using ptraj
Thomas Cheatham III
(Tue Sep 01 2009 - 10:25:10 PDT)
RE: [AMBER] ATP/GTP parameters
Steve Seibold
(Tue Sep 01 2009 - 04:42:09 PDT)
RE: [AMBER] ATP/GTP parameters
FyD
(Tue Sep 01 2009 - 09:25:45 PDT)
RE: [AMBER] ATP/GTP parameters
Steve Seibold
(Tue Sep 01 2009 - 09:29:59 PDT)
Re: [AMBER] momentum in MD simulation
case
(Tue Sep 01 2009 - 04:48:52 PDT)
Re: [AMBER] cpin error
case
(Tue Sep 01 2009 - 05:23:04 PDT)
Re: [AMBER] Changing pH of the system
nicholus bhattacharjee
(Tue Sep 01 2009 - 06:43:01 PDT)
[AMBER] how to pull a dna
balaji nagarajan
(Tue Sep 01 2009 - 07:24:29 PDT)
[AMBER] How to use AMBER 10 for PCA analysis.
Catein Catherine
(Tue Sep 01 2009 - 08:30:56 PDT)
[AMBER] Reg. snapshot_statistics.out.snap
Rose Tamil
(Tue Sep 01 2009 - 10:04:08 PDT)
Re: [AMBER] Creating new counterions
Bill Ross
(Tue Sep 01 2009 - 12:58:55 PDT)
Re: [AMBER] Creating new counterions
case
(Tue Sep 01 2009 - 13:03:48 PDT)
[AMBER] Question regarding PCA analysis.
Catein Catherine
(Tue Sep 01 2009 - 20:53:10 PDT)
Re: [AMBER] Question regarding PCA analysis.
Chris Moth
(Thu Sep 03 2009 - 07:17:42 PDT)
RE: [AMBER] Question regarding PCA analysis.
Catein Catherine
(Thu Sep 03 2009 - 19:55:42 PDT)
[AMBER] MM-GBAS decomp error
Catein Catherine
(Fri Sep 04 2009 - 03:29:35 PDT)
[AMBER] Simulation short peptide and protein interaction
Rilei Yu
(Tue Sep 01 2009 - 17:50:29 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
case
(Wed Sep 02 2009 - 05:15:06 PDT)
[AMBER] How to find water-mediated hydrogen bond?
Catein Catherine
(Wed Sep 02 2009 - 07:10:37 PDT)
Re: [AMBER] How to find water-mediated hydrogen bond?
Hannes Loeffler
(Thu Sep 03 2009 - 00:53:51 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
Rilei Yu
(Thu Sep 03 2009 - 05:22:10 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
Carlos Simmerling
(Thu Sep 03 2009 - 06:34:27 PDT)
[AMBER] question about ptraj
Jeffrey
(Wed Sep 02 2009 - 01:20:12 PDT)
RE: [AMBER] question about ptraj
Niel Henriksen
(Wed Sep 02 2009 - 07:37:39 PDT)
[AMBER] how to give force values in TMD
balaji nagarajan
(Wed Sep 02 2009 - 03:03:41 PDT)
[AMBER] Active site - Ion - Search engine
s. Bill
(Wed Sep 02 2009 - 07:53:39 PDT)
[AMBER] What is dual topology
Ashish Runthala
(Wed Sep 02 2009 - 08:25:19 PDT)
Re: [AMBER] What is dual topology
case
(Wed Sep 02 2009 - 08:48:51 PDT)
[AMBER] How to consider the off centre charges
Ashish Runthala
(Wed Sep 02 2009 - 08:28:40 PDT)
Re: [AMBER] How to consider the off centre charges
case
(Wed Sep 02 2009 - 08:50:12 PDT)
[AMBER] unit of force constant
balaji nagarajan
(Wed Sep 02 2009 - 09:57:25 PDT)
[AMBER] antechamber bug: output of incorrect bond character
Matthew Walsh
(Wed Sep 02 2009 - 11:37:44 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
case
(Wed Sep 02 2009 - 18:53:37 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
Matthew Walsh
(Wed Sep 02 2009 - 21:30:04 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
case
(Thu Sep 03 2009 - 04:26:19 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
Matthew Walsh
(Thu Sep 03 2009 - 08:15:00 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
case
(Thu Sep 03 2009 - 09:29:03 PDT)
[AMBER] Question about the debug forces
Faezeh Salehi
(Wed Sep 02 2009 - 14:30:47 PDT)
[AMBER] how to deal with aromatic nitro group with antechamber
Lin Xu
(Wed Sep 02 2009 - 15:04:13 PDT)
Re: [AMBER] how to deal with aromatic nitro group with antechamber
case
(Wed Sep 02 2009 - 19:15:14 PDT)
[AMBER] Heme + Fe(II) + O2 + histidine parameter
Haining Liu
(Wed Sep 02 2009 - 20:36:31 PDT)
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
FyD
(Thu Sep 03 2009 - 00:03:45 PDT)
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
Haining Liu
(Thu Sep 03 2009 - 14:13:09 PDT)
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
FyD
(Fri Sep 04 2009 - 00:43:00 PDT)
[AMBER] ATP and GTP parameters
E.M.
(Wed Sep 02 2009 - 22:29:47 PDT)
Re: [AMBER] ATP and GTP parameters
FyD
(Wed Sep 02 2009 - 23:15:54 PDT)
Re: [AMBER] ATP and GTP parameters
E.M.
(Wed Sep 02 2009 - 23:30:31 PDT)
Re: [AMBER] ATP and GTP parameters
Sergey Samsonov
(Wed Sep 02 2009 - 23:35:33 PDT)
Re: [AMBER] ATP and GTP parameters
FyD
(Thu Sep 03 2009 - 02:36:45 PDT)
Re: [AMBER] ATP and GTP parameters
Carlos Simmerling
(Thu Sep 03 2009 - 04:54:13 PDT)
Re: [AMBER] ATP and GTP parameters
E.M.
(Thu Sep 03 2009 - 19:08:02 PDT)
Re: [AMBER] ATP and GTP parameters
FyD
(Thu Sep 03 2009 - 01:35:11 PDT)
[AMBER] What should be the standard input file when imin=5
Ashish Runthala
(Thu Sep 03 2009 - 00:25:49 PDT)
Re: [AMBER] What should be the standard input file when imin=5
Carlos Simmerling
(Thu Sep 03 2009 - 04:55:48 PDT)
[AMBER] QM/MM simulation
gaurav panwar
(Thu Sep 03 2009 - 13:11:42 PDT)
RE: [AMBER] QM/MM simulation
Ross Walker
(Thu Sep 03 2009 - 13:43:45 PDT)
[AMBER] Problem about adding a small residue to DNA
Yikan Chen
(Thu Sep 03 2009 - 21:33:52 PDT)
回复： [AMBER] Problem about adding a small residue to DNA
Rilei Yu
(Thu Sep 03 2009 - 23:33:50 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
Yikan Chen
(Fri Sep 04 2009 - 12:51:38 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
Yikan Chen
(Fri Sep 04 2009 - 13:03:54 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
case
(Fri Sep 04 2009 - 13:37:23 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
Yikan Chen
(Fri Sep 04 2009 - 14:38:27 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
case
(Sun Sep 06 2009 - 05:30:23 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
Yikan Chen
(Sun Sep 06 2009 - 08:47:04 PDT)
Re: [AMBER] Problem about adding a small residue to DNA
FyD
(Mon Sep 07 2009 - 02:53:14 PDT)
Re: [AMBER] Problem about adding a small residue to DNA
case
(Fri Sep 04 2009 - 12:32:53 PDT)
[AMBER] Kinetics
Soumya Lipsa Rath
(Thu Sep 03 2009 - 23:39:54 PDT)
Re: [AMBER] Kinetics
case
(Fri Sep 04 2009 - 12:29:24 PDT)
Re: [AMBER] Kinetics
Soumya Lipsa Rath
(Mon Sep 07 2009 - 23:36:18 PDT)
[AMBER] Enquiry about MM/GBSA output file.
Catein Catherine
(Tue Sep 08 2009 - 00:14:19 PDT)
[AMBER] prep file
Jio M
(Fri Sep 04 2009 - 02:24:04 PDT)
Re: [AMBER] prep file
case
(Fri Sep 04 2009 - 07:09:06 PDT)
[AMBER] Dummy atoms and MM-PBSA
Alireza Shaneh
(Fri Sep 04 2009 - 09:48:16 PDT)
Re: [AMBER] Dummy atoms and MM-PBSA
Ray Luo
(Fri Sep 04 2009 - 11:25:33 PDT)
[AMBER] nmropt option
Jio M
(Fri Sep 04 2009 - 11:05:25 PDT)
Re: [AMBER] nmropt option
Carlos Simmerling
(Fri Sep 04 2009 - 11:15:13 PDT)
Re: [AMBER] nmropt option
Jio M
(Fri Sep 04 2009 - 22:23:09 PDT)
Re: [AMBER] nmropt option
Carlos Simmerling
(Sat Sep 05 2009 - 03:59:04 PDT)
[AMBER] Provisional Support for AMBER 10 PMEMD on NVIDIA GPUs
Ross Walker
(Fri Sep 04 2009 - 11:51:44 PDT)
[AMBER] Antechamber generate a prep file in a wrong order...
Yikan Chen
(Sat Sep 05 2009 - 12:37:53 PDT)
Re: [AMBER] Antechamber generate a prep file in a wrong order...
case
(Sun Sep 06 2009 - 05:26:02 PDT)
[AMBER] How to find a protein's energy
Ashish Runthala
(Sat Sep 05 2009 - 20:48:01 PDT)
Re: [AMBER] How to find a protein's energy
Carlos Simmerling
(Sun Sep 06 2009 - 04:49:53 PDT)
Re: [AMBER] How to find a protein's energy
Ashish Runthala
(Sun Sep 06 2009 - 05:30:26 PDT)
[AMBER] R.E.D. : Gaussian Error
manoj singh
(Sun Sep 06 2009 - 11:40:48 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
FyD
(Sun Sep 06 2009 - 12:41:41 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
manoj singh
(Sun Sep 06 2009 - 21:22:44 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
FyD
(Sun Sep 06 2009 - 22:07:34 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
manoj singh
(Sun Sep 06 2009 - 22:46:54 PDT)
[AMBER] (no subject)
gunajyoti das
(Mon Sep 07 2009 - 02:21:45 PDT)
[AMBER] problem in QM/MM input file
gaurav panwar
(Mon Sep 07 2009 - 10:33:20 PDT)
Re: [AMBER] problem in QM/MM input file
Tom Joseph
(Tue Sep 08 2009 - 05:37:56 PDT)
[AMBER] loadpdb
Jagdeesh C
(Mon Sep 07 2009 - 10:36:58 PDT)
Re: [AMBER] loadpdb
Carlos Simmerling
(Mon Sep 07 2009 - 11:01:10 PDT)
Re: [AMBER] loadpdb
Jagdeesh C
(Mon Sep 07 2009 - 11:31:42 PDT)
Re: [AMBER] loadpdb
Ashish Runthala
(Mon Sep 07 2009 - 20:00:47 PDT)
[AMBER] problem of PBCAL/GB
Qinghua Liao
(Mon Sep 07 2009 - 22:05:37 PDT)
Re: [AMBER] problem of PBCAL/GB
Ray Luo
(Mon Sep 07 2009 - 22:58:44 PDT)
Re: [AMBER] problem of PBCAL/GB
Qinghua Liao
(Tue Sep 08 2009 - 02:40:42 PDT)
Re: [AMBER] loadpdb
Tom Joseph
(Tue Sep 08 2009 - 05:31:56 PDT)
Re: [AMBER] loadpdb
Carlos Simmerling
(Tue Sep 08 2009 - 06:39:12 PDT)
Re: [AMBER] loadpdb
Bill Ross
(Tue Sep 08 2009 - 09:58:12 PDT)
Re: [AMBER] loadpdb
Jagdeesh C
(Tue Sep 08 2009 - 18:55:36 PDT)
Re: [AMBER] loadpdb
Carlos Simmerling
(Wed Sep 09 2009 - 04:35:04 PDT)
[AMBER] Any tutorial on the proper way to merge a ligand and protein?
Dean Cuebas
(Wed Sep 09 2009 - 11:26:02 PDT)
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
case
(Wed Sep 09 2009 - 11:50:13 PDT)
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
Dean Cuebas
(Wed Sep 09 2009 - 12:12:00 PDT)
RE: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
cc cc
(Fri Sep 11 2009 - 11:16:55 PDT)
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
case
(Fri Sep 11 2009 - 12:54:39 PDT)
[AMBER] What is the unit of RMSF?
Catein Catherine
(Sat Sep 12 2009 - 01:13:02 PDT)
Re: [AMBER] What is the unit of RMSF?
case
(Sat Sep 12 2009 - 06:37:42 PDT)
[AMBER] how to calculate correct RMSF?
Catein Catherine
(Mon Sep 14 2009 - 04:21:52 PDT)
Re: [AMBER] how to calculate correct RMSF?
case
(Mon Sep 14 2009 - 05:33:29 PDT)
RE: [AMBER] how to calculate correct RMSF?
Catein Catherine
(Mon Sep 14 2009 - 17:57:20 PDT)
Re: [AMBER] loadpdb
Bill Ross
(Tue Sep 08 2009 - 19:53:32 PDT)
[AMBER] general query: implicit solvation
Jio M
(Tue Sep 08 2009 - 02:28:49 PDT)
Re: [AMBER] general query: implicit solvation
Carlos Simmerling
(Tue Sep 08 2009 - 03:11:24 PDT)
[AMBER] loading PDB of a RNA sequence
gunajyoti das
(Tue Sep 08 2009 - 03:31:47 PDT)
Re: [AMBER] loading PDB of a RNA sequence
Carlos Simmerling
(Tue Sep 08 2009 - 03:33:57 PDT)
Re: [AMBER] loading PDB of a RNA sequence
case
(Tue Sep 08 2009 - 04:38:34 PDT)
[AMBER] No sp2 improper torsion term for NB-CA-CB-CB
qiaoyan
(Tue Sep 08 2009 - 05:29:17 PDT)
Re: [AMBER] No sp2 improper torsion term for NB-CA-CB-CB
case
(Tue Sep 08 2009 - 05:58:33 PDT)
[AMBER] unit of force constant
balaji nagarajan
(Tue Sep 08 2009 - 06:16:08 PDT)
Re: [AMBER] unit of force constant
Carlos Simmerling
(Tue Sep 08 2009 - 06:21:40 PDT)
RE: [AMBER] unit of force constant
balaji nagarajan
(Tue Sep 08 2009 - 06:41:37 PDT)
Re: [AMBER] Problem with loading PDB into tleap
Kamali Sripathi
(Tue Sep 08 2009 - 06:49:20 PDT)
Re: [AMBER] Problem with loading PDB into tleap
Ashish Runthala
(Tue Sep 08 2009 - 08:14:46 PDT)
[AMBER] How to denature DNA
balaji nagarajan
(Tue Sep 08 2009 - 07:00:43 PDT)
Re: [AMBER] How to denature DNA
Adrian Roitberg
(Tue Sep 08 2009 - 07:04:30 PDT)
RE: [AMBER] How to denature DNA
balaji nagarajan
(Tue Sep 08 2009 - 09:29:57 PDT)
Re: [AMBER] How to denature DNA
Adrian Roitberg
(Tue Sep 08 2009 - 09:46:51 PDT)
RE: [AMBER] How to denature DNA
balaji nagarajan
(Tue Sep 08 2009 - 09:58:36 PDT)
Re: [AMBER] How to denature DNA
Adrian Roitberg
(Tue Sep 08 2009 - 10:12:00 PDT)
RE: [AMBER] How to denature DNA
Bill Ross
(Tue Sep 08 2009 - 10:33:09 PDT)
RE: [AMBER] How to denature DNA
balaji nagarajan
(Tue Sep 08 2009 - 21:01:55 PDT)
RE: [AMBER] How to denature DNA
Bill Ross
(Wed Sep 09 2009 - 09:38:04 PDT)
RE: [AMBER] How to denature DNA
balaji nagarajan
(Wed Sep 09 2009 - 10:14:37 PDT)
[AMBER] AmberTools 1.3 / CHAMBER
Mag. Thomas Taylor
(Tue Sep 08 2009 - 07:29:23 PDT)
[AMBER] amoeba.prm problem?
Ivan Gladich
(Tue Sep 08 2009 - 07:31:43 PDT)
Re: [AMBER] amoeba.prm problem?
case
(Wed Sep 09 2009 - 12:17:39 PDT)
Re: [AMBER] amoeba.prm problem?
Ivan Gladich
(Fri Sep 11 2009 - 13:34:07 PDT)
Re: [AMBER] amoeba.prm problem?
case
(Sat Sep 12 2009 - 06:46:52 PDT)
Re: [AMBER] amoeba.prm problem?
Ivan Gladich
(Fri Sep 18 2009 - 12:57:39 PDT)
[AMBER] TI in Amber9/10
Alessandro S. Nascimento
(Tue Sep 08 2009 - 08:47:26 PDT)
Re: [AMBER] TI in Amber9/10
steinbrt.rci.rutgers.edu
(Tue Sep 08 2009 - 10:41:32 PDT)
Re: [AMBER] TI in Amber9/10
Ilyas Yildirim
(Tue Sep 08 2009 - 11:07:40 PDT)
Re: [AMBER] loadpdb
Bill Ross
(Tue Sep 08 2009 - 09:53:03 PDT)
[AMBER] logdvdl does not work
helde010.umn.edu
(Tue Sep 08 2009 - 09:53:14 PDT)
Re: [AMBER] logdvdl does not work
steinbrt.rci.rutgers.edu
(Tue Sep 08 2009 - 10:37:31 PDT)
[AMBER] loading a following attached protein in amber 10
albert albert
(Tue Sep 08 2009 - 10:09:09 PDT)
Re: [AMBER] loading a following attached protein in amber 10
David Watson
(Tue Sep 08 2009 - 10:26:19 PDT)
Re: [AMBER] loading a following attached protein in amber 10
case
(Tue Sep 08 2009 - 10:27:47 PDT)
Re: [AMBER] loading a following attached protein in amber 10
albert albert
(Tue Sep 08 2009 - 10:43:55 PDT)
[AMBER] QMMM NEB with PM3-PDDG fails with ASSERTion 'ierr.eq.0' pimd_init.f line 320
Keith Van Nostrand
(Tue Sep 08 2009 - 12:26:14 PDT)
Re: [AMBER] QMMM NEB with PM3-PDDG fails with ASSERTion 'ierr.eq.0' pimd_init.f line 320
case
(Sat Sep 12 2009 - 07:17:16 PDT)
[AMBER] Hbond analysis: Direction of the hydrogen
Age.Skjevik.biomed.uib.no
(Tue Sep 08 2009 - 12:45:19 PDT)
Re: [AMBER] Hbond analysis: Direction of the hydrogen
Shulin Zhuang
(Tue Sep 08 2009 - 12:54:22 PDT)
Re: [AMBER] Hbond analysis: Direction of the hydrogen
Age.Skjevik.biomed.uib.no
(Tue Sep 08 2009 - 14:56:50 PDT)
[AMBER] Leap warning
manoj singh
(Tue Sep 08 2009 - 22:38:33 PDT)
Re: [AMBER] Leap warning
Ashish Runthala
(Wed Sep 09 2009 - 00:21:03 PDT)
Re: [AMBER] Leap warning
case
(Wed Sep 09 2009 - 04:31:36 PDT)
Re: [AMBER] Leap warning
Bill Ross
(Wed Sep 09 2009 - 09:49:05 PDT)
[AMBER] about the number of residues after MD
Qinghua Liao
(Wed Sep 09 2009 - 00:23:03 PDT)
Re: [AMBER] PK zero for specific dihedral and parmchk
Carlos Simmerling
(Wed Sep 09 2009 - 03:23:31 PDT)
Re: [AMBER] PK zero for specific dihedral and parmchk
case
(Wed Sep 09 2009 - 04:32:51 PDT)
[AMBER] gaff.dat questions
gilbert.bluemarble.net
(Wed Sep 09 2009 - 07:02:28 PDT)
Re: [AMBER] gaff.dat questions
case
(Wed Sep 09 2009 - 07:16:23 PDT)
[AMBER] parameterization of protein-ligand complex
cc cc
(Wed Sep 09 2009 - 09:29:07 PDT)
Re: [AMBER] parameterization of protein-ligand complex
case
(Wed Sep 09 2009 - 09:39:05 PDT)
RE: [AMBER] parameterization of protein-ligand complex
cc cc
(Wed Sep 09 2009 - 10:44:17 PDT)
RE: [AMBER] parameterization of protein-ligand complex
Jeff Yeo
(Mon Sep 14 2009 - 08:03:25 PDT)
Re: [AMBER] parameterization of protein-ligand complex
Bill Ross
(Wed Sep 09 2009 - 10:12:28 PDT)
RE: [AMBER] parameterization of protein-ligand complex
cc cc
(Wed Sep 09 2009 - 10:41:52 PDT)
[AMBER] Solvate in an alkaline solution
vallespardojl.chem.leidenuniv.nl
(Thu Sep 10 2009 - 01:07:07 PDT)
Re: [AMBER] Solvate in an alkaline solution
case
(Thu Sep 10 2009 - 05:05:44 PDT)
[AMBER] input file
Mag. Thomas Taylor
(Thu Sep 10 2009 - 03:48:06 PDT)
Re: [AMBER] input file
Carlos Simmerling
(Thu Sep 10 2009 - 04:03:17 PDT)
Re: [AMBER] input file / skinnb
Mag. Thomas Taylor
(Wed Sep 16 2009 - 00:49:32 PDT)
Re: [AMBER] input file / skinnb
case
(Wed Sep 16 2009 - 04:56:01 PDT)
Re: [AMBER] input file / skinnb
Mag. Thomas Taylor
(Wed Sep 16 2009 - 22:50:16 PDT)
Re: [AMBER] input file / skinnb
Robert Duke
(Wed Sep 16 2009 - 07:23:06 PDT)
Re: [AMBER] input file
Jenny Iskrenova
(Thu Sep 10 2009 - 06:05:03 PDT)
Re: [AMBER] input file
Ashish Runthala
(Thu Sep 10 2009 - 07:05:32 PDT)
[AMBER] QM/MM minimization
gaurav panwar
(Thu Sep 10 2009 - 07:05:37 PDT)
Re: [AMBER] QM/MM minimization
Pansy Patel
(Thu Sep 10 2009 - 07:09:48 PDT)
Re: [AMBER] input file
Bill Ross
(Thu Sep 10 2009 - 09:51:10 PDT)
[AMBER] question with radial distribution function
Ganesh Kamath
(Thu Sep 10 2009 - 15:08:34 PDT)
[AMBER] periodic boundary condition for implicit solvent simulation and SHORT command
Workalemahu Berhanu
(Thu Sep 10 2009 - 15:37:32 PDT)
Re: [AMBER] periodic boundary condition for implicit solvent simulation and SHORT command
case
(Thu Sep 10 2009 - 19:04:53 PDT)
[AMBER] DMF solvent box
Abhishek Banerjee
(Thu Sep 10 2009 - 19:40:21 PDT)
Re: [AMBER] DMF solvent box
Jio M
(Fri Sep 11 2009 - 08:00:40 PDT)
Re: [AMBER] DMF solvent box
FyD
(Sat Sep 12 2009 - 07:07:30 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Sat Sep 12 2009 - 22:33:39 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Sun Sep 13 2009 - 01:56:18 PDT)
Re: [AMBER] DMF solvent box
FyD
(Sun Sep 13 2009 - 02:25:33 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Sun Sep 13 2009 - 07:24:04 PDT)
Re: [AMBER] DMF solvent box
FyD
(Sun Sep 13 2009 - 10:01:13 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Mon Sep 14 2009 - 06:18:30 PDT)
Re: [AMBER] DMF solvent box
FyD
(Mon Sep 14 2009 - 08:04:58 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Tue Sep 15 2009 - 21:33:23 PDT)
Re: [AMBER] DMF solvent box
FyD
(Tue Sep 15 2009 - 22:09:42 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Wed Sep 16 2009 - 23:15:53 PDT)
Re: [AMBER] DMF solvent box
FyD
(Thu Sep 17 2009 - 00:00:06 PDT)
Re: [AMBER] DMF solvent box
Abhishek Banerjee
(Fri Sep 18 2009 - 22:24:08 PDT)
Re: [AMBER] DMF solvent box
FyD
(Fri Sep 18 2009 - 23:36:20 PDT)
[AMBER] PBSA for gp41 binding free energy
shuqing wang
(Thu Sep 10 2009 - 23:42:59 PDT)
Re: [AMBER] PBSA for gp41 binding free energy
Ray Luo
(Fri Sep 11 2009 - 18:59:07 PDT)
[AMBER] dihedral force calculation
Germain Vallverdu
(Fri Sep 11 2009 - 07:35:08 PDT)
Re: [AMBER] dihedral force calculation
case
(Sat Sep 12 2009 - 07:04:34 PDT)
[AMBER] RESP RED
s. Bill
(Fri Sep 11 2009 - 11:40:24 PDT)
Re: [AMBER] RESP RED
FyD
(Sat Sep 12 2009 - 07:35:16 PDT)
[AMBER] charge consideration
Jio M
(Fri Sep 11 2009 - 13:17:34 PDT)
Re: [AMBER] charge consideration
case
(Sat Sep 12 2009 - 06:59:56 PDT)
[AMBER] "nan" in gaussian input files generated by antechamber
Yikan Chen
(Fri Sep 11 2009 - 13:19:04 PDT)
Re: [AMBER] "nan" in gaussian input files generated by antechamber
case
(Sat Sep 12 2009 - 06:55:14 PDT)
Re: [AMBER] "nan" in gaussian input files generated by antechamber
FyD
(Sat Sep 12 2009 - 07:58:52 PDT)
[AMBER] What is the Optimum Ph for solvating a protein
Ashish Runthala
(Sun Sep 13 2009 - 06:08:40 PDT)
Re: [AMBER] What is the Optimum Ph for solvating a protein
case
(Sun Sep 13 2009 - 14:19:24 PDT)
[AMBER] load .crd & .top in xleap
vallespardojl.chem.leidenuniv.nl
(Sun Sep 13 2009 - 07:21:15 PDT)
Re: [AMBER] load .crd & .top in xleap
oguz gurbulak
(Sun Sep 13 2009 - 12:20:26 PDT)
[AMBER] re: charge interaction
Jio M
(Sun Sep 13 2009 - 07:38:43 PDT)
Re: [AMBER] re: charge interaction
case
(Sun Sep 13 2009 - 14:13:19 PDT)
Re: [AMBER] re: charge interaction
case
(Sun Sep 13 2009 - 14:37:55 PDT)
[AMBER] variable header for ABMD
stephane acoca
(Sun Sep 13 2009 - 20:03:00 PDT)
[AMBER] re: charge consideration
Jio M
(Mon Sep 14 2009 - 01:38:27 PDT)
[AMBER] How to prepare the coordinate and toplogy files in leap ?
xuemeiwang1103
(Mon Sep 14 2009 - 02:03:59 PDT)
Re: [AMBER] How to prepare the coordinate and toplogy files in leap ?
case
(Mon Sep 14 2009 - 04:56:08 PDT)
[AMBER] error xleap: XaLeap_wcl is empty
Mari Carmen Pérez
(Mon Sep 14 2009 - 02:59:09 PDT)
Re: [AMBER] error xleap: XaLeap_wcl is empty
case
(Mon Sep 14 2009 - 05:02:12 PDT)
[AMBER] Ki and G
s. Bill
(Mon Sep 14 2009 - 04:39:20 PDT)
Re: [AMBER] Ki and G
steinbrt.rci.rutgers.edu
(Mon Sep 14 2009 - 04:59:40 PDT)
Re: [AMBER] Ki and G
Adrian Roitberg
(Mon Sep 14 2009 - 07:28:57 PDT)
Re: [AMBER] Ki and G
Marek Maly
(Mon Sep 14 2009 - 10:02:36 PDT)
Re: [AMBER] Ki and G
case
(Mon Sep 14 2009 - 10:23:49 PDT)
Re: [AMBER] Ki and G
Marek Maly
(Mon Sep 14 2009 - 11:41:33 PDT)
Re: [AMBER] Ki and G
steinbrt.rci.rutgers.edu
(Mon Sep 14 2009 - 13:09:55 PDT)
Re: [AMBER] Ki and G
case
(Mon Sep 14 2009 - 13:24:05 PDT)
Re: [AMBER] Ki and G
Marek Maly
(Tue Sep 15 2009 - 04:58:07 PDT)
[AMBER] Carbon Nanotube Library file (CNT)
Christopher Stiles
(Mon Sep 14 2009 - 06:59:57 PDT)
[AMBER] radial distribution function in amber
Ganesh Kamath
(Mon Sep 14 2009 - 07:58:56 PDT)
[AMBER] Question on ECAVITY term of MM_PBSA
Gianluca Degliesposti
(Mon Sep 14 2009 - 08:28:12 PDT)
[AMBER] makeDIST_RST: no map function
Workalemahu Berhanu
(Mon Sep 14 2009 - 12:30:15 PDT)
RE: [AMBER] makeDIST_RST: no map function
Duggan, Brendan M.
(Tue Sep 15 2009 - 06:40:00 PDT)
Re: [AMBER] makeDIST_RST: no map function
case
(Tue Sep 15 2009 - 07:38:23 PDT)
Re: [AMBER] makeDIST_RST: no map function
Workalemahu Berhanu
(Tue Sep 15 2009 - 08:11:27 PDT)
Re: [AMBER] makeDIST_RST: no map function
Workalemahu Berhanu
(Tue Sep 15 2009 - 08:24:56 PDT)
[AMBER] Problem on PMEMD
zyxism
(Mon Sep 14 2009 - 18:11:57 PDT)
Re: [AMBER] Problem on PMEMD
Tom Joseph
(Mon Sep 14 2009 - 18:34:11 PDT)
Re: [AMBER] Problem on PMEMD
Adrian Roitberg
(Mon Sep 14 2009 - 18:40:35 PDT)
Re: Re: [AMBER] Problem on PMEMD
zyxism
(Mon Sep 14 2009 - 18:41:50 PDT)
Re: [AMBER] Problem on PMEMD
Robert Duke
(Mon Sep 14 2009 - 18:46:16 PDT)
[AMBER] Error in minimal
xuemeiwang1103
(Tue Sep 15 2009 - 00:27:18 PDT)
Re: [AMBER] Error in minimal
case
(Tue Sep 15 2009 - 04:56:02 PDT)
Re:Re: [AMBER] Error in minimal
xuemeiwang1103
(Tue Sep 15 2009 - 06:54:58 PDT)
Re: Re: [AMBER] Error in minimal
case
(Tue Sep 15 2009 - 15:15:06 PDT)
[AMBER] problem running pmemd gbrna tests
wong105.llnl.gov
(Tue Sep 15 2009 - 11:07:14 PDT)
[AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
Paul Ledbetter
(Tue Sep 15 2009 - 13:25:56 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
case
(Tue Sep 15 2009 - 15:12:25 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
Paul Ledbetter
(Tue Sep 15 2009 - 16:34:54 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
Bill Ross
(Tue Sep 15 2009 - 15:15:38 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
Paul Ledbetter
(Tue Sep 15 2009 - 16:40:09 PDT)
[AMBER] About the PMEMD compiling for CUDA
wang
(Tue Sep 15 2009 - 22:17:52 PDT)
RE: [AMBER] About the PMEMD compiling for CUDA
Ross Walker
(Tue Sep 15 2009 - 23:55:11 PDT)
[AMBER] About the PMEMD compiling for CUDA
Ross Walker
(Tue Sep 15 2009 - 22:26:19 PDT)
[AMBER] database
Steve Seibold
(Wed Sep 16 2009 - 07:59:14 PDT)
Re: [AMBER] database
case
(Wed Sep 16 2009 - 08:26:24 PDT)
RE: [AMBER] database
Steve Seibold
(Wed Sep 16 2009 - 09:11:47 PDT)
Re: [AMBER] database
case
(Wed Sep 16 2009 - 09:53:56 PDT)
RE: [AMBER] database
FyD
(Wed Sep 16 2009 - 09:59:30 PDT)
RE: [AMBER] database
Steve Seibold
(Wed Sep 16 2009 - 10:14:46 PDT)
RE: [AMBER] database
FyD
(Wed Sep 16 2009 - 11:56:16 PDT)
RE: [AMBER] database
Steve Seibold
(Thu Sep 17 2009 - 06:43:25 PDT)
RE: [AMBER] database
FyD
(Thu Sep 17 2009 - 09:00:22 PDT)
RE: [AMBER] database
Steve Seibold
(Thu Sep 17 2009 - 12:46:20 PDT)
RE: [AMBER] database
Jeff Yeo
(Thu Sep 17 2009 - 14:01:48 PDT)
RE: [AMBER] database
FyD
(Thu Sep 17 2009 - 14:54:29 PDT)
Re: [AMBER] database
case
(Thu Sep 17 2009 - 15:23:30 PDT)
Re: [AMBER] database
FyD
(Fri Sep 18 2009 - 00:28:53 PDT)
RE: [AMBER] database
Steve Seibold
(Fri Sep 18 2009 - 08:03:44 PDT)
Re: [AMBER] database
case
(Fri Sep 18 2009 - 10:23:08 PDT)
RE: [AMBER] database
Steve Seibold
(Fri Sep 18 2009 - 12:10:19 PDT)
RE: [AMBER] database
FyD
(Fri Sep 18 2009 - 17:49:17 PDT)
Re: [AMBER] database
case
(Fri Sep 18 2009 - 19:46:39 PDT)
RE: [AMBER] database
Bill Ross
(Wed Sep 16 2009 - 10:54:47 PDT)
[AMBER] antechamber error
Taufik Al-Sarraj
(Wed Sep 16 2009 - 11:18:32 PDT)
Re: [AMBER] antechamber error
case
(Wed Sep 16 2009 - 11:43:56 PDT)
Re: [AMBER] antechamber error
Taufik Al-Sarraj
(Wed Sep 16 2009 - 11:52:26 PDT)
Re: [AMBER] antechamber error
Taufik Al-Sarraj
(Wed Sep 16 2009 - 12:11:26 PDT)
RE: [AMBER] database
FyD
(Wed Sep 16 2009 - 11:58:38 PDT)
[AMBER] RDC analysis: "No restraint defined"
Michael Durney
(Wed Sep 16 2009 - 09:10:34 PDT)
Re: [AMBER] RDC analysis: "No restraint defined"
case
(Wed Sep 16 2009 - 09:47:41 PDT)
[AMBER] question with hbond
Ganesh Kamath
(Wed Sep 16 2009 - 14:36:18 PDT)
[AMBER] loading RNA sequence in xleap
gunajyoti das
(Thu Sep 17 2009 - 01:27:49 PDT)
Re: [AMBER] loading RNA sequence in xleap
FyD
(Thu Sep 17 2009 - 02:39:09 PDT)
Re: [AMBER] loading RNA sequence in xleap
case
(Thu Sep 17 2009 - 05:13:38 PDT)
[AMBER] PES QM and MM
s. Bill
(Thu Sep 17 2009 - 03:53:46 PDT)
[AMBER] Force Field Fitting
s. Bill
(Thu Sep 17 2009 - 04:36:33 PDT)
Re: [AMBER] Force Field Fitting
manoj singh
(Thu Sep 17 2009 - 10:20:50 PDT)
[AMBER] Discrepancy between AMBER and VMD calculation
Sunita Patel
(Thu Sep 17 2009 - 12:11:07 PDT)
Re: [AMBER] Force Field Fitting
s. Bill
(Thu Sep 17 2009 - 12:27:46 PDT)
Re: [AMBER] Force Field Fitting
manoj singh
(Thu Sep 17 2009 - 12:32:33 PDT)
[AMBER] install ambertools
Karl Kirschner
(Thu Sep 17 2009 - 05:55:22 PDT)
Re: [AMBER] install ambertools
case
(Thu Sep 17 2009 - 06:40:28 PDT)
[AMBER] NAB syntax
Michael Durney
(Thu Sep 17 2009 - 07:58:58 PDT)
Re: [AMBER] NAB syntax
Andreas Svrcek-Seiler
(Thu Sep 17 2009 - 08:21:51 PDT)
Re: [AMBER] NAB syntax
case
(Thu Sep 17 2009 - 08:22:29 PDT)
[AMBER] pH calculations
Michael Durney
(Thu Sep 17 2009 - 08:01:08 PDT)
Re: [AMBER] PES QM and MM
Bill Ross
(Thu Sep 17 2009 - 09:08:35 PDT)
[AMBER] how to ouput the electrostatic potential at a single atomic position?
Jose Borreguero
(Thu Sep 17 2009 - 12:06:54 PDT)
[AMBER] LINMIN failure notice
Jio M
(Fri Sep 18 2009 - 03:20:18 PDT)
Re: [AMBER] LINMIN failure notice
Ashish Runthala
(Fri Sep 18 2009 - 03:46:09 PDT)
RE: [AMBER] LINMIN failure notice
Ross Walker
(Fri Sep 18 2009 - 16:41:33 PDT)
Re: [AMBER] LINMIN failure notice
case
(Fri Sep 18 2009 - 04:38:33 PDT)
Re: [AMBER] LINMIN failure notice
Bill Ross
(Fri Sep 18 2009 - 09:18:41 PDT)
[AMBER] PROBLEM WITH CHCL3BOX pdb
Silvia Carlotto
(Fri Sep 18 2009 - 05:49:12 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
case
(Fri Sep 18 2009 - 06:26:40 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
Hannes Loeffler
(Fri Sep 18 2009 - 08:16:06 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
case
(Fri Sep 18 2009 - 15:01:23 PDT)
[AMBER] how to make 50% aqueous TFE box?
parul sharma
(Fri Sep 18 2009 - 06:47:01 PDT)
Re: [AMBER] how to make 50% aqueous TFE box?
FyD
(Fri Sep 18 2009 - 17:22:35 PDT)
[AMBER] Cygwin Home Directory
Wallace Kunin
(Fri Sep 18 2009 - 10:51:17 PDT)
Re: [AMBER] Cygwin Home Directory
Bill Ross
(Fri Sep 18 2009 - 13:56:17 PDT)
Re: [AMBER] Cygwin Home Directory
Wallace Kunin
(Sat Sep 19 2009 - 09:13:20 PDT)
Re: [AMBER] Cygwin Home Directory
case
(Sat Sep 19 2009 - 15:11:57 PDT)
Re: [AMBER] Cygwin Home Directory
Ashish Runthala
(Sat Sep 19 2009 - 19:51:11 PDT)
Re: [AMBER] Cygwin Home Directory
Wallace Kunin
(Mon Sep 21 2009 - 09:29:11 PDT)
Re: [AMBER] Cygwin Home Directory
case
(Mon Sep 21 2009 - 10:14:59 PDT)
Re: [AMBER] Cygwin Home Directory
Bill Ross
(Sat Sep 19 2009 - 10:29:59 PDT)
Re: [AMBER] Cygwin Home Directory
Bill Ross
(Mon Sep 21 2009 - 10:45:02 PDT)
Re: [AMBER] Cygwin Home Directory
Bill Ross
(Fri Sep 18 2009 - 11:19:44 PDT)
Re: [AMBER] Cygwin Home Directory
Wallace Kunin
(Fri Sep 18 2009 - 12:12:22 PDT)
Re: [AMBER] Cygwin Home Directory
manoj singh
(Fri Sep 18 2009 - 12:30:28 PDT)
[AMBER] warning in dispatchToken
Jeff Yeo
(Sun Sep 20 2009 - 03:30:57 PDT)
Re: [AMBER] warning in dispatchToken
case
(Sun Sep 20 2009 - 06:14:49 PDT)
[AMBER] combining MD runs for post-MD analysis
Jeff Yeo
(Sun Sep 20 2009 - 17:02:12 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
Qinghua Liao
(Sun Sep 20 2009 - 18:01:22 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
case
(Sun Sep 20 2009 - 18:35:08 PDT)
[AMBER] Regarding united atom force field
aneesh cna
(Mon Sep 21 2009 - 03:17:20 PDT)
Re: [AMBER] Regarding united atom force field
Ray Luo
(Mon Sep 21 2009 - 10:32:34 PDT)
Re: [AMBER] Regarding united atom force field
FyD
(Mon Sep 21 2009 - 23:13:03 PDT)
[AMBER] problem building sander.apbs
Oliver Kuhn
(Mon Sep 21 2009 - 03:49:48 PDT)
Re: [AMBER] problem building sander.apbs
case
(Mon Sep 21 2009 - 04:39:41 PDT)
Re: [AMBER] problem building sander.apbs
Oliver Kuhn
(Mon Sep 21 2009 - 07:03:34 PDT)
Re: [AMBER] problem building sander.apbs
case
(Mon Sep 21 2009 - 07:38:20 PDT)
Re: [AMBER] problem building sander.apbs
Oliver Kuhn
(Tue Sep 22 2009 - 01:10:10 PDT)
Re: [AMBER] problem building sander.apbs
case
(Tue Sep 22 2009 - 12:12:50 PDT)
Re: [AMBER] problem building sander.apbs
Robert Konecny
(Tue Sep 22 2009 - 12:55:40 PDT)
[AMBER] Question on ECAVITY term of MM_PBSA
Gianluca Degliesposti
(Mon Sep 21 2009 - 04:18:27 PDT)
Re: [AMBER] Question on ECAVITY term of MM_PBSA
Ray Luo
(Mon Sep 21 2009 - 10:30:57 PDT)
Re: [AMBER] Question on ECAVITY term of MM_PBSA
Ray Luo
(Mon Sep 21 2009 - 18:28:32 PDT)
[AMBER] generate prmtop file from CHARMM psf file
Jeffrey
(Mon Sep 21 2009 - 07:34:59 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
Bill Ross
(Mon Sep 21 2009 - 10:32:53 PDT)
[AMBER] ACS COMP division awards- Oct 19th deadline
Carlos Simmerling
(Mon Sep 21 2009 - 10:49:28 PDT)
[AMBER] Installing AmberTools and Amber10 in Ubuntu - Instructions.
David Dubins
(Mon Sep 21 2009 - 16:02:47 PDT)
Re: [AMBER] Installing AmberTools and Amber10 in Ubuntu - Instructions.
oguz gurbulak
(Mon Sep 21 2009 - 23:46:27 PDT)
[AMBER] Pentane UA model
aneesh cna
(Mon Sep 21 2009 - 23:23:35 PDT)
Re: [AMBER] Pentane UA model
FyD
(Tue Sep 22 2009 - 00:02:50 PDT)
[AMBER] RMSDf of heavy atoms
Syed Tarique Moin
(Tue Sep 22 2009 - 04:45:26 PDT)
[AMBER] MM_PBSA decomp problem
B. Nandy
(Tue Sep 22 2009 - 05:29:23 PDT)
[AMBER] Compiling Amber10
Williams, John
(Tue Sep 22 2009 - 05:56:43 PDT)
[AMBER] ambertools and Snow Leopard 64 bits kernel
Alan
(Tue Sep 22 2009 - 06:55:25 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
Tom Joseph
(Tue Sep 22 2009 - 11:12:55 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
Alan
(Tue Sep 22 2009 - 14:41:18 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
Tom Joseph
(Tue Sep 22 2009 - 17:18:17 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
gilbert.bluemarble.net
(Tue Sep 22 2009 - 19:18:12 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
Alan
(Wed Sep 23 2009 - 07:21:30 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
case
(Wed Sep 23 2009 - 13:26:16 PDT)
[AMBER] Installation issue
Ashveen Seenauth
(Tue Sep 22 2009 - 09:17:49 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Tue Sep 22 2009 - 10:50:28 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Tue Sep 22 2009 - 10:55:34 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Tue Sep 22 2009 - 10:59:46 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Tue Sep 22 2009 - 11:16:01 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Tue Sep 22 2009 - 10:59:22 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Tue Sep 22 2009 - 11:28:43 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Wed Sep 23 2009 - 08:28:55 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Wed Sep 23 2009 - 08:35:44 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Wed Sep 23 2009 - 08:41:53 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Wed Sep 23 2009 - 08:43:42 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Wed Sep 23 2009 - 08:54:27 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Wed Sep 23 2009 - 09:08:33 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Wed Sep 23 2009 - 09:29:28 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Wed Sep 23 2009 - 09:36:59 PDT)
Re: [AMBER] Installation issue
Bill Ross
(Tue Sep 22 2009 - 09:31:47 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Tue Sep 22 2009 - 09:45:13 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Tue Sep 22 2009 - 09:55:20 PDT)
Re: [AMBER] Installation issue
Ashveen Seenauth
(Tue Sep 22 2009 - 10:25:12 PDT)
Re: [AMBER] Installation issue
Tom Joseph
(Tue Sep 22 2009 - 10:41:51 PDT)
[AMBER] Parameter Problem
manoj singh
(Tue Sep 22 2009 - 12:35:53 PDT)
[AMBER] group distance restraint
XIAOHUICANG
(Tue Sep 22 2009 - 12:36:03 PDT)
[AMBER] Problem regarding Hbond analysis
Abhishek Singh
(Tue Sep 22 2009 - 12:43:50 PDT)
[AMBER] Parameter Problem
manoj singh
(Tue Sep 22 2009 - 12:46:59 PDT)
Re: [AMBER] Parameter Problem
FyD
(Wed Sep 23 2009 - 01:28:49 PDT)
Re: [AMBER] Parameter Problem
Manish Kumar
(Wed Sep 23 2009 - 06:28:11 PDT)
Re: [AMBER] Problem regarding Hbond analysis
Bill Ross
(Tue Sep 22 2009 - 13:00:55 PDT)
[AMBER] parameter for manganese
Yuqin Cai
(Tue Sep 22 2009 - 15:48:41 PDT)
Re: [AMBER] parameter for manganese
Mahmoud A. A. Ibrahim
(Thu Sep 24 2009 - 05:17:29 PDT)
[AMBER] apbs-amber
Rilei Yu
(Tue Sep 22 2009 - 15:58:40 PDT)
Re: [AMBER] apbs-amber
Robert Konecny
(Tue Sep 22 2009 - 16:18:28 PDT)
Re: [AMBER] apbs-amber
Rilei Yu
(Tue Sep 22 2009 - 18:41:08 PDT)
[AMBER] solvent accessible surface area
Ganesh Kamath
(Wed Sep 23 2009 - 12:07:23 PDT)
Re: [AMBER] solvent accessible surface area
Carlos Simmerling
(Wed Sep 23 2009 - 12:20:24 PDT)
Re: [AMBER] solvent accessible surface area
Ganesh Kamath
(Wed Sep 23 2009 - 12:26:33 PDT)
Re: [AMBER] solvent accessible surface area
Carlos Simmerling
(Wed Sep 23 2009 - 12:29:57 PDT)
[AMBER] fatal "does not have a type" error in tleap for a protein-ligand complex
Jeff Yeo
(Wed Sep 23 2009 - 16:24:51 PDT)
Re: [AMBER] fatal "does not have a type" error in tleap for a protein-ligand complex
case
(Thu Sep 24 2009 - 15:13:39 PDT)
[AMBER] Teragrid
Beale, John
(Thu Sep 24 2009 - 05:08:56 PDT)
Re: [AMBER] Teragrid
Carlos Simmerling
(Thu Sep 24 2009 - 05:11:41 PDT)
[AMBER] CH3Hg+ parameters
babak minoofar
(Thu Sep 24 2009 - 05:08:12 PDT)
[AMBER] Ewald error estimated
xuemeiwang1103
(Thu Sep 24 2009 - 20:01:02 PDT)
Re: [AMBER] Ewald error estimated
Qinghua Liao
(Fri Sep 25 2009 - 00:48:14 PDT)
Re: [AMBER] Ewald error estimated
case
(Fri Sep 25 2009 - 08:15:31 PDT)
Re: [AMBER] Ewald error estimated
Robert Duke
(Fri Sep 25 2009 - 08:50:18 PDT)
[AMBER] Ewald error estimated
xuemeiwang1103
(Thu Sep 24 2009 - 20:01:05 PDT)
[AMBER] pmemd and internal dielectric
Serguei Vassiliev
(Fri Sep 25 2009 - 08:47:50 PDT)
Re: [AMBER] pmemd and internal dielectric
Robert Duke
(Fri Sep 25 2009 - 09:07:06 PDT)
Re: [AMBER] pmemd and internal dielectric
Adrian Roitberg
(Fri Sep 25 2009 - 09:44:56 PDT)
Re: [AMBER] pmemd and internal dielectric
Serguei Vassiliev
(Fri Sep 25 2009 - 12:47:46 PDT)
Re: [AMBER] pmemd and internal dielectric
Robert Duke
(Fri Sep 25 2009 - 13:10:57 PDT)
Re: [AMBER] pmemd and internal dielectric
case
(Fri Sep 25 2009 - 14:59:56 PDT)
Re: [AMBER] pmemd and internal dielectric
Robert Duke
(Fri Sep 25 2009 - 15:19:10 PDT)
[AMBER] Attaching a ligand to a protein residue.
Kipras Redeckas
(Fri Sep 25 2009 - 14:33:58 PDT)
Re: [AMBER] Attaching a ligand to a protein residue.
case
(Sat Sep 26 2009 - 07:23:18 PDT)
Re: [AMBER] Attaching a ligand to a protein residue.
Kipras Redeckas
(Sun Sep 27 2009 - 03:23:42 PDT)
[AMBER] problem when doing mm/pbsa: bad atom type Br
Baifan Wang
(Sun Sep 27 2009 - 19:50:46 PDT)
Re: [AMBER] problem when doing mm/pbsa: bad atom type Br
Ray Luo
(Sun Sep 27 2009 - 20:10:25 PDT)
Re: [AMBER] problem when doing mm/pbsa: bad atom type Br
Baifan Wang
(Mon Sep 28 2009 - 00:26:06 PDT)
[AMBER] How to obtain amber top and crd from pdb file with POPE lipids?
decastro.physics.usyd.edu.au
(Sun Sep 27 2009 - 21:52:20 PDT)
Re: [AMBER] How to obtain amber top and crd from pdb file with POPE lipids?
Hannes Loeffler
(Mon Sep 28 2009 - 00:34:12 PDT)
[AMBER] Your help about ptraj in AmberTools!]]
Rosina Noto
(Mon Sep 28 2009 - 02:59:09 PDT)
[AMBER] trouble using iAPBS
Oliver Kuhn
(Mon Sep 28 2009 - 05:08:27 PDT)
Re: [AMBER] trouble using iAPBS
Robert Konecny
(Mon Sep 28 2009 - 07:20:31 PDT)
[AMBER] Gap in rst file
Katrina Lexa
(Mon Sep 28 2009 - 07:47:43 PDT)
[AMBER] LJ-partial charges and force field parameters for ethylene glycol and glycerol
Ganesh Kamath
(Mon Sep 28 2009 - 10:03:13 PDT)
Re: [AMBER] LJ-partial charges and force field parameters for ethylene glycol and glycerol
FyD
(Mon Sep 28 2009 - 11:23:20 PDT)
[AMBER] partial charges in Amber force field
Jihang Wang
(Mon Sep 28 2009 - 10:52:28 PDT)
Re: [AMBER] partial charges in Amber force field
FyD
(Mon Sep 28 2009 - 11:32:42 PDT)
[AMBER] why should one restrain the position of the counterions?
Jose Borreguero
(Mon Sep 28 2009 - 11:28:20 PDT)
[AMBER] Problem in compiling AMBER9 in parallel !
Pradipta Bandyopadhyay
(Tue Sep 29 2009 - 06:04:47 PDT)
Re: [AMBER] Problem in compiling AMBER9 in parallel !
Abhishek Banerjee
(Tue Sep 29 2009 - 10:25:36 PDT)
Re: [AMBER] Problem in compiling AMBER9 in parallel !
case
(Tue Sep 29 2009 - 11:08:41 PDT)
[AMBER] Problem in test run
Kshatresh Dutta Dubey
(Tue Sep 29 2009 - 07:21:56 PDT)
Re: [AMBER] Problem in test run
Carlos Simmerling
(Tue Sep 29 2009 - 07:26:38 PDT)
Re: [AMBER] Problem in test run
Kshatresh Dutta Dubey
(Tue Sep 29 2009 - 08:05:13 PDT)
Re: [AMBER] Problem in test run
Carlos Simmerling
(Tue Sep 29 2009 - 08:06:55 PDT)
Re: [AMBER] Problem in test run
Kshatresh Dutta Dubey
(Tue Sep 29 2009 - 08:14:35 PDT)
Re: [AMBER] Problem in test run
Kshatresh Dutta Dubey
(Tue Sep 29 2009 - 08:23:29 PDT)
Re: [AMBER] Problem in test run
case
(Tue Sep 29 2009 - 09:50:19 PDT)
[AMBER] Zinc
Sel Ercan
(Tue Sep 29 2009 - 14:26:53 PDT)
Re: [AMBER] Zinc
Rubben Torella
(Tue Sep 29 2009 - 14:31:31 PDT)
Re: [AMBER] Zinc
Roman Osman
(Tue Sep 29 2009 - 17:08:28 PDT)
[AMBER] Compiling Amber with gfortran-4.5.0 on a mac
Ben Roberts
(Tue Sep 29 2009 - 14:37:31 PDT)
[AMBER] MM_PBSA
Zhongjie Liang
(Tue Sep 29 2009 - 18:30:40 PDT)
[AMBER] too many missing parameters in frcmod for the prep of my ligand
xueqin pang
(Wed Sep 30 2009 - 02:21:31 PDT)
Re: [AMBER] too many missing parameters in frcmod for the prep of my ligand
FyD
(Wed Sep 30 2009 - 03:30:32 PDT)
[AMBER] No restrt file
xuemeiwang1103
(Wed Sep 30 2009 - 02:32:38 PDT)
Re: [AMBER] No restrt file
case
(Wed Sep 30 2009 - 03:29:32 PDT)
Re:Re: [AMBER] No restrt file
null
(Wed Sep 30 2009 - 04:39:24 PDT)
Re: Re: [AMBER] No restrt file
case
(Wed Sep 30 2009 - 05:06:47 PDT)
Last message date
:
Wed Sep 30 2009 - 05:30:02 PDT
Archived on
: Fri Nov 22 2024 - 05:53:52 PST
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