Hi,
I am trying to use hbond in ptraj and want to find the neighbouring water
hbonding with the donor here OE1 (oxygen)
trajin data-0.00.crd
center origin
image origin center
donor mask .3535
hbond series hbond hbond_wat.out solventdonor WAT O solventacceptor WAT O H1
solventacceptor WAT O H2 time 1.0 angle 120.0 distance 3.5
go
I use these set of command and I get segmentation fault. It also asks me to
increase the solventneighbor which i increase to 100.
Could anyone please help me on this.
thanks,
ganesh
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Received on Wed Sep 16 2009 - 15:00:02 PDT
