Amber Archive Sep 2009 by author
473 messages
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Starting
Wed Sep 02 2009 - 23:06:58 PDT,
Ending
Wed Sep 30 2009 - 05:30:02 PDT
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Abhishek Banerjee
Re: [AMBER] Problem in compiling AMBER9 in parallel !
(Tue Sep 29 2009 - 10:25:36 PDT)
Re: [AMBER] DMF solvent box
(Fri Sep 18 2009 - 22:24:08 PDT)
Re: [AMBER] DMF solvent box
(Wed Sep 16 2009 - 23:15:53 PDT)
Re: [AMBER] DMF solvent box
(Tue Sep 15 2009 - 21:33:23 PDT)
Re: [AMBER] DMF solvent box
(Mon Sep 14 2009 - 06:18:30 PDT)
Re: [AMBER] DMF solvent box
(Sun Sep 13 2009 - 07:24:04 PDT)
Re: [AMBER] DMF solvent box
(Sun Sep 13 2009 - 01:56:18 PDT)
Re: [AMBER] DMF solvent box
(Sat Sep 12 2009 - 22:33:39 PDT)
[AMBER] DMF solvent box
(Thu Sep 10 2009 - 19:40:21 PDT)
Abhishek Singh
[AMBER] Problem regarding Hbond analysis
(Tue Sep 22 2009 - 12:43:50 PDT)
Adrian Roitberg
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 09:44:56 PDT)
Re: [AMBER] Problem on PMEMD
(Mon Sep 14 2009 - 18:40:35 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 07:28:57 PDT)
Re: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 10:12:00 PDT)
Re: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 09:46:51 PDT)
Re: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 07:04:30 PDT)
Age.Skjevik.biomed.uib.no
Re: [AMBER] Hbond analysis: Direction of the hydrogen
(Tue Sep 08 2009 - 14:56:50 PDT)
[AMBER] Hbond analysis: Direction of the hydrogen
(Tue Sep 08 2009 - 12:45:19 PDT)
Alan
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Wed Sep 23 2009 - 07:21:30 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Tue Sep 22 2009 - 14:41:18 PDT)
[AMBER] ambertools and Snow Leopard 64 bits kernel
(Tue Sep 22 2009 - 06:55:25 PDT)
albert albert
Re: [AMBER] loading a following attached protein in amber 10
(Tue Sep 08 2009 - 10:43:55 PDT)
[AMBER] loading a following attached protein in amber 10
(Tue Sep 08 2009 - 10:09:09 PDT)
Alessandro S. Nascimento
[AMBER] TI in Amber9/10
(Tue Sep 08 2009 - 08:47:26 PDT)
Alireza Shaneh
[AMBER] Dummy atoms and MM-PBSA
(Fri Sep 04 2009 - 09:48:16 PDT)
Andreas Svrcek-Seiler
Re: [AMBER] NAB syntax
(Thu Sep 17 2009 - 08:21:51 PDT)
aneesh cna
[AMBER] Pentane UA model
(Mon Sep 21 2009 - 23:23:35 PDT)
[AMBER] Regarding united atom force field
(Mon Sep 21 2009 - 03:17:20 PDT)
Ashish Runthala
Re: [AMBER] Cygwin Home Directory
(Sat Sep 19 2009 - 19:51:11 PDT)
Re: [AMBER] LINMIN failure notice
(Fri Sep 18 2009 - 03:46:09 PDT)
[AMBER] What is the Optimum Ph for solvating a protein
(Sun Sep 13 2009 - 06:08:40 PDT)
Re: [AMBER] input file
(Thu Sep 10 2009 - 07:05:32 PDT)
Re: [AMBER] Leap warning
(Wed Sep 09 2009 - 00:21:03 PDT)
Re: [AMBER] Problem with loading PDB into tleap
(Tue Sep 08 2009 - 08:14:46 PDT)
Re: [AMBER] loadpdb
(Mon Sep 07 2009 - 20:00:47 PDT)
Re: [AMBER] How to find a protein's energy
(Sun Sep 06 2009 - 05:30:26 PDT)
[AMBER] How to find a protein's energy
(Sat Sep 05 2009 - 20:48:01 PDT)
[AMBER] What should be the standard input file when imin=5
(Thu Sep 03 2009 - 00:25:49 PDT)
[AMBER] How to consider the off centre charges
(Wed Sep 02 2009 - 08:28:40 PDT)
[AMBER] What is dual topology
(Wed Sep 02 2009 - 08:25:19 PDT)
Ashveen Seenauth
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 08:54:27 PDT)
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 08:41:53 PDT)
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 08:28:55 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:59:46 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:25:12 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 09:45:13 PDT)
[AMBER] Installation issue
(Tue Sep 22 2009 - 09:17:49 PDT)
B. Nandy
[AMBER] MM_PBSA decomp problem
(Tue Sep 22 2009 - 05:29:23 PDT)
babak minoofar
[AMBER] CH3Hg+ parameters
(Thu Sep 24 2009 - 05:08:12 PDT)
Baifan Wang
Re: [AMBER] problem when doing mm/pbsa: bad atom type Br
(Mon Sep 28 2009 - 00:26:06 PDT)
[AMBER] problem when doing mm/pbsa: bad atom type Br
(Sun Sep 27 2009 - 19:50:46 PDT)
Bala subramanian
[AMBER] symbol lookup error
(Tue Sep 01 2009 - 01:43:51 PDT)
balaji nagarajan
RE: [AMBER] How to denature DNA
(Wed Sep 09 2009 - 10:14:37 PDT)
RE: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 21:01:55 PDT)
RE: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 09:58:36 PDT)
RE: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 09:29:57 PDT)
[AMBER] How to denature DNA
(Tue Sep 08 2009 - 07:00:43 PDT)
RE: [AMBER] unit of force constant
(Tue Sep 08 2009 - 06:41:37 PDT)
[AMBER] unit of force constant
(Tue Sep 08 2009 - 06:16:08 PDT)
[AMBER] unit of force constant
(Wed Sep 02 2009 - 09:57:25 PDT)
[AMBER] how to give force values in TMD
(Wed Sep 02 2009 - 03:03:41 PDT)
[AMBER] how to pull a dna
(Tue Sep 01 2009 - 07:24:29 PDT)
[AMBER] how to pull a dna
(Mon Aug 31 2009 - 19:39:10 PDT)
Beale, John
[AMBER] Teragrid
(Thu Sep 24 2009 - 05:08:56 PDT)
Ben Roberts
[AMBER] Compiling Amber with gfortran-4.5.0 on a mac
(Tue Sep 29 2009 - 14:37:31 PDT)
bharat lakhani
Re: [AMBER] How to derive charges from the output
(Tue Sep 01 2009 - 01:46:12 PDT)
Bill Ross
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 09:36:59 PDT)
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 09:29:28 PDT)
Re: [AMBER] Problem regarding Hbond analysis
(Tue Sep 22 2009 - 13:00:55 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 11:28:43 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:59:22 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:55:34 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:50:28 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 09:31:47 PDT)
Re: [AMBER] Cygwin Home Directory
(Mon Sep 21 2009 - 10:45:02 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
(Mon Sep 21 2009 - 10:32:53 PDT)
Re: [AMBER] Cygwin Home Directory
(Sat Sep 19 2009 - 10:29:59 PDT)
Re: [AMBER] Cygwin Home Directory
(Fri Sep 18 2009 - 13:56:17 PDT)
Re: [AMBER] Cygwin Home Directory
(Fri Sep 18 2009 - 11:19:44 PDT)
Re: [AMBER] LINMIN failure notice
(Fri Sep 18 2009 - 09:18:41 PDT)
Re: [AMBER] PES QM and MM
(Thu Sep 17 2009 - 09:08:35 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 10:54:47 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
(Tue Sep 15 2009 - 15:15:38 PDT)
Re: [AMBER] input file
(Thu Sep 10 2009 - 09:51:10 PDT)
Re: [AMBER] parameterization of protein-ligand complex
(Wed Sep 09 2009 - 10:12:28 PDT)
Re: [AMBER] Leap warning
(Wed Sep 09 2009 - 09:49:05 PDT)
RE: [AMBER] How to denature DNA
(Wed Sep 09 2009 - 09:38:04 PDT)
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 19:53:32 PDT)
RE: [AMBER] How to denature DNA
(Tue Sep 08 2009 - 10:33:09 PDT)
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 09:58:12 PDT)
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 09:53:03 PDT)
Re: [AMBER] Creating new counterions
(Tue Sep 01 2009 - 12:58:55 PDT)
Carlos Simmerling
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 08:06:55 PDT)
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 07:26:38 PDT)
Re: [AMBER] Teragrid
(Thu Sep 24 2009 - 05:11:41 PDT)
Re: [AMBER] solvent accessible surface area
(Wed Sep 23 2009 - 12:29:57 PDT)
Re: [AMBER] solvent accessible surface area
(Wed Sep 23 2009 - 12:20:24 PDT)
[AMBER] ACS COMP division awards- Oct 19th deadline
(Mon Sep 21 2009 - 10:49:28 PDT)
Re: [AMBER] input file
(Thu Sep 10 2009 - 04:03:17 PDT)
Re: [AMBER] loadpdb
(Wed Sep 09 2009 - 04:35:04 PDT)
Re: [AMBER] PK zero for specific dihedral and parmchk
(Wed Sep 09 2009 - 03:23:31 PDT)
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 06:39:12 PDT)
Re: [AMBER] unit of force constant
(Tue Sep 08 2009 - 06:21:40 PDT)
Re: [AMBER] loading PDB of a RNA sequence
(Tue Sep 08 2009 - 03:33:57 PDT)
Re: [AMBER] general query: implicit solvation
(Tue Sep 08 2009 - 03:11:24 PDT)
Re: [AMBER] loadpdb
(Mon Sep 07 2009 - 11:01:10 PDT)
Re: [AMBER] How to find a protein's energy
(Sun Sep 06 2009 - 04:49:53 PDT)
Re: [AMBER] nmropt option
(Sat Sep 05 2009 - 03:59:04 PDT)
Re: [AMBER] nmropt option
(Fri Sep 04 2009 - 11:15:13 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
(Thu Sep 03 2009 - 06:34:27 PDT)
Re: [AMBER] What should be the standard input file when imin=5
(Thu Sep 03 2009 - 04:55:48 PDT)
Re: [AMBER] ATP and GTP parameters
(Thu Sep 03 2009 - 04:54:13 PDT)
case
Re: Re: [AMBER] No restrt file
(Wed Sep 30 2009 - 05:06:47 PDT)
Re: [AMBER] No restrt file
(Wed Sep 30 2009 - 03:29:32 PDT)
Re: [AMBER] Problem in compiling AMBER9 in parallel !
(Tue Sep 29 2009 - 11:08:41 PDT)
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 09:50:19 PDT)
Re: [AMBER] Attaching a ligand to a protein residue.
(Sat Sep 26 2009 - 07:23:18 PDT)
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 14:59:56 PDT)
Re: [AMBER] Ewald error estimated
(Fri Sep 25 2009 - 08:15:31 PDT)
Re: [AMBER] fatal "does not have a type" error in tleap for a protein-ligand complex
(Thu Sep 24 2009 - 15:13:39 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Wed Sep 23 2009 - 13:26:16 PDT)
Re: [AMBER] problem building sander.apbs
(Tue Sep 22 2009 - 12:12:50 PDT)
Re: [AMBER] Cygwin Home Directory
(Mon Sep 21 2009 - 10:14:59 PDT)
Re: [AMBER] problem building sander.apbs
(Mon Sep 21 2009 - 07:38:20 PDT)
Re: [AMBER] problem building sander.apbs
(Mon Sep 21 2009 - 04:39:41 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
(Sun Sep 20 2009 - 18:35:08 PDT)
Re: [AMBER] warning in dispatchToken
(Sun Sep 20 2009 - 06:14:49 PDT)
Re: [AMBER] Cygwin Home Directory
(Sat Sep 19 2009 - 15:11:57 PDT)
Re: [AMBER] database
(Fri Sep 18 2009 - 19:46:39 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
(Fri Sep 18 2009 - 15:01:23 PDT)
Re: [AMBER] database
(Fri Sep 18 2009 - 10:23:08 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
(Fri Sep 18 2009 - 06:26:40 PDT)
Re: [AMBER] LINMIN failure notice
(Fri Sep 18 2009 - 04:38:33 PDT)
Re: [AMBER] database
(Thu Sep 17 2009 - 15:23:30 PDT)
Re: [AMBER] NAB syntax
(Thu Sep 17 2009 - 08:22:29 PDT)
Re: [AMBER] install ambertools
(Thu Sep 17 2009 - 06:40:28 PDT)
Re: [AMBER] loading RNA sequence in xleap
(Thu Sep 17 2009 - 05:13:38 PDT)
Re: [AMBER] antechamber error
(Wed Sep 16 2009 - 11:43:56 PDT)
Re: [AMBER] database
(Wed Sep 16 2009 - 09:53:56 PDT)
Re: [AMBER] RDC analysis: "No restraint defined"
(Wed Sep 16 2009 - 09:47:41 PDT)
Re: [AMBER] database
(Wed Sep 16 2009 - 08:26:24 PDT)
Re: [AMBER] input file / skinnb
(Wed Sep 16 2009 - 04:56:01 PDT)
Re: Re: [AMBER] Error in minimal
(Tue Sep 15 2009 - 15:15:06 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
(Tue Sep 15 2009 - 15:12:25 PDT)
Re: [AMBER] makeDIST_RST: no map function
(Tue Sep 15 2009 - 07:38:23 PDT)
Re: [AMBER] Error in minimal
(Tue Sep 15 2009 - 04:56:02 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 13:24:05 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 10:23:49 PDT)
Re: [AMBER] how to calculate correct RMSF?
(Mon Sep 14 2009 - 05:33:29 PDT)
Re: [AMBER] error xleap: XaLeap_wcl is empty
(Mon Sep 14 2009 - 05:02:12 PDT)
Re: [AMBER] How to prepare the coordinate and toplogy files in leap ?
(Mon Sep 14 2009 - 04:56:08 PDT)
Re: [AMBER] re: charge interaction
(Sun Sep 13 2009 - 14:37:55 PDT)
Re: [AMBER] What is the Optimum Ph for solvating a protein
(Sun Sep 13 2009 - 14:19:24 PDT)
Re: [AMBER] re: charge interaction
(Sun Sep 13 2009 - 14:13:19 PDT)
Re: [AMBER] QMMM NEB with PM3-PDDG fails with ASSERTion 'ierr.eq.0' pimd_init.f line 320
(Sat Sep 12 2009 - 07:17:16 PDT)
Re: [AMBER] dihedral force calculation
(Sat Sep 12 2009 - 07:04:34 PDT)
Re: [AMBER] charge consideration
(Sat Sep 12 2009 - 06:59:56 PDT)
Re: [AMBER] "nan" in gaussian input files generated by antechamber
(Sat Sep 12 2009 - 06:55:14 PDT)
Re: [AMBER] amoeba.prm problem?
(Sat Sep 12 2009 - 06:46:52 PDT)
Re: [AMBER] What is the unit of RMSF?
(Sat Sep 12 2009 - 06:37:42 PDT)
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
(Fri Sep 11 2009 - 12:54:39 PDT)
Re: [AMBER] periodic boundary condition for implicit solvent simulation and SHORT command
(Thu Sep 10 2009 - 19:04:53 PDT)
Re: [AMBER] Solvate in an alkaline solution
(Thu Sep 10 2009 - 05:05:44 PDT)
Re: [AMBER] amoeba.prm problem?
(Wed Sep 09 2009 - 12:17:39 PDT)
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
(Wed Sep 09 2009 - 11:50:13 PDT)
Re: [AMBER] parameterization of protein-ligand complex
(Wed Sep 09 2009 - 09:39:05 PDT)
Re: [AMBER] gaff.dat questions
(Wed Sep 09 2009 - 07:16:23 PDT)
Re: [AMBER] PK zero for specific dihedral and parmchk
(Wed Sep 09 2009 - 04:32:51 PDT)
Re: [AMBER] Leap warning
(Wed Sep 09 2009 - 04:31:36 PDT)
Re: [AMBER] loading a following attached protein in amber 10
(Tue Sep 08 2009 - 10:27:47 PDT)
Re: [AMBER] No sp2 improper torsion term for NB-CA-CB-CB
(Tue Sep 08 2009 - 05:58:33 PDT)
Re: [AMBER] loading PDB of a RNA sequence
(Tue Sep 08 2009 - 04:38:34 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Sun Sep 06 2009 - 05:30:23 PDT)
Re: [AMBER] Antechamber generate a prep file in a wrong order...
(Sun Sep 06 2009 - 05:26:02 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Fri Sep 04 2009 - 13:37:23 PDT)
Re: [AMBER] Problem about adding a small residue to DNA
(Fri Sep 04 2009 - 12:32:53 PDT)
Re: [AMBER] Kinetics
(Fri Sep 04 2009 - 12:29:24 PDT)
Re: [AMBER] prep file
(Fri Sep 04 2009 - 07:09:06 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
(Thu Sep 03 2009 - 09:29:03 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
(Thu Sep 03 2009 - 04:26:19 PDT)
Re: [AMBER] how to deal with aromatic nitro group with antechamber
(Wed Sep 02 2009 - 19:15:14 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
(Wed Sep 02 2009 - 18:53:37 PDT)
Re: [AMBER] How to consider the off centre charges
(Wed Sep 02 2009 - 08:50:12 PDT)
Re: [AMBER] What is dual topology
(Wed Sep 02 2009 - 08:48:51 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
(Wed Sep 02 2009 - 05:15:06 PDT)
Re: [AMBER] Creating new counterions
(Tue Sep 01 2009 - 13:03:48 PDT)
Re: [AMBER] How to remove Hydrogen using ptraj
(Tue Sep 01 2009 - 10:19:51 PDT)
Re: [AMBER] cpin error
(Tue Sep 01 2009 - 05:23:04 PDT)
Re: [AMBER] momentum in MD simulation
(Tue Sep 01 2009 - 04:48:52 PDT)
Re: [AMBER] Docking with Amber
(Mon Aug 31 2009 - 17:58:49 PDT)
Catein Catherine
RE: [AMBER] how to calculate correct RMSF?
(Mon Sep 14 2009 - 17:57:20 PDT)
[AMBER] how to calculate correct RMSF?
(Mon Sep 14 2009 - 04:21:52 PDT)
[AMBER] What is the unit of RMSF?
(Sat Sep 12 2009 - 01:13:02 PDT)
[AMBER] Enquiry about MM/GBSA output file.
(Tue Sep 08 2009 - 00:14:19 PDT)
[AMBER] MM-GBAS decomp error
(Fri Sep 04 2009 - 03:29:35 PDT)
RE: [AMBER] Question regarding PCA analysis.
(Thu Sep 03 2009 - 19:55:42 PDT)
[AMBER] How to find water-mediated hydrogen bond?
(Wed Sep 02 2009 - 07:10:37 PDT)
[AMBER] Question regarding PCA analysis.
(Tue Sep 01 2009 - 20:53:10 PDT)
[AMBER] How to use AMBER 10 for PCA analysis.
(Tue Sep 01 2009 - 08:30:56 PDT)
cc cc
RE: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
(Fri Sep 11 2009 - 11:16:55 PDT)
RE: [AMBER] parameterization of protein-ligand complex
(Wed Sep 09 2009 - 10:44:17 PDT)
RE: [AMBER] parameterization of protein-ligand complex
(Wed Sep 09 2009 - 10:41:52 PDT)
[AMBER] parameterization of protein-ligand complex
(Wed Sep 09 2009 - 09:29:07 PDT)
Chris Moth
Re: [AMBER] Question regarding PCA analysis.
(Thu Sep 03 2009 - 07:17:42 PDT)
Christopher Stiles
[AMBER] Carbon Nanotube Library file (CNT)
(Mon Sep 14 2009 - 06:59:57 PDT)
David Dubins
[AMBER] Installing AmberTools and Amber10 in Ubuntu - Instructions.
(Mon Sep 21 2009 - 16:02:47 PDT)
David Watson
Re: [AMBER] loading a following attached protein in amber 10
(Tue Sep 08 2009 - 10:26:19 PDT)
Dean Cuebas
Re: [AMBER] Any tutorial on the proper way to merge a ligand and protein?
(Wed Sep 09 2009 - 12:12:00 PDT)
[AMBER] Any tutorial on the proper way to merge a ligand and protein?
(Wed Sep 09 2009 - 11:26:02 PDT)
decastro.physics.usyd.edu.au
[AMBER] How to obtain amber top and crd from pdb file with POPE lipids?
(Sun Sep 27 2009 - 21:52:20 PDT)
Duggan, Brendan M.
RE: [AMBER] makeDIST_RST: no map function
(Tue Sep 15 2009 - 06:40:00 PDT)
E.M.
Re: [AMBER] ATP and GTP parameters
(Thu Sep 03 2009 - 19:08:02 PDT)
Re: [AMBER] ATP and GTP parameters
(Wed Sep 02 2009 - 23:30:31 PDT)
[AMBER] ATP and GTP parameters
(Wed Sep 02 2009 - 22:29:47 PDT)
Re: [AMBER] ATP/GTP parameters
(Mon Aug 31 2009 - 21:48:39 PDT)
Faezeh Salehi
[AMBER] Question about the debug forces
(Wed Sep 02 2009 - 14:30:47 PDT)
FyD
Re: [AMBER] too many missing parameters in frcmod for the prep of my ligand
(Wed Sep 30 2009 - 03:30:32 PDT)
Re: [AMBER] partial charges in Amber force field
(Mon Sep 28 2009 - 11:32:42 PDT)
Re: [AMBER] LJ-partial charges and force field parameters for ethylene glycol and glycerol
(Mon Sep 28 2009 - 11:23:20 PDT)
Re: [AMBER] Parameter Problem
(Wed Sep 23 2009 - 01:28:49 PDT)
Re: [AMBER] Pentane UA model
(Tue Sep 22 2009 - 00:02:50 PDT)
Re: [AMBER] Regarding united atom force field
(Mon Sep 21 2009 - 23:13:03 PDT)
Re: [AMBER] DMF solvent box
(Fri Sep 18 2009 - 23:36:20 PDT)
RE: [AMBER] database
(Fri Sep 18 2009 - 17:49:17 PDT)
Re: [AMBER] how to make 50% aqueous TFE box?
(Fri Sep 18 2009 - 17:22:35 PDT)
Re: [AMBER] database
(Fri Sep 18 2009 - 00:28:53 PDT)
RE: [AMBER] database
(Thu Sep 17 2009 - 14:54:29 PDT)
RE: [AMBER] database
(Thu Sep 17 2009 - 09:00:22 PDT)
Re: [AMBER] loading RNA sequence in xleap
(Thu Sep 17 2009 - 02:39:09 PDT)
Re: [AMBER] DMF solvent box
(Thu Sep 17 2009 - 00:00:06 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 11:58:38 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 11:56:16 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 09:59:30 PDT)
Re: [AMBER] DMF solvent box
(Tue Sep 15 2009 - 22:09:42 PDT)
Re: [AMBER] DMF solvent box
(Mon Sep 14 2009 - 08:04:58 PDT)
Re: [AMBER] DMF solvent box
(Sun Sep 13 2009 - 10:01:13 PDT)
Re: [AMBER] DMF solvent box
(Sun Sep 13 2009 - 02:25:33 PDT)
Re: [AMBER] "nan" in gaussian input files generated by antechamber
(Sat Sep 12 2009 - 07:58:52 PDT)
Re: [AMBER] RESP RED
(Sat Sep 12 2009 - 07:35:16 PDT)
Re: [AMBER] DMF solvent box
(Sat Sep 12 2009 - 07:07:30 PDT)
Re: [AMBER] Problem about adding a small residue to DNA
(Mon Sep 07 2009 - 02:53:14 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
(Sun Sep 06 2009 - 22:07:34 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
(Sun Sep 06 2009 - 12:41:41 PDT)
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
(Fri Sep 04 2009 - 00:43:00 PDT)
Re: [AMBER] ATP and GTP parameters
(Thu Sep 03 2009 - 02:36:45 PDT)
Re: [AMBER] ATP and GTP parameters
(Thu Sep 03 2009 - 01:35:11 PDT)
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
(Thu Sep 03 2009 - 00:03:45 PDT)
Re: [AMBER] ATP and GTP parameters
(Wed Sep 02 2009 - 23:15:54 PDT)
RE: [AMBER] ATP/GTP parameters
(Tue Sep 01 2009 - 09:25:45 PDT)
Re: [AMBER] ATP/GTP parameters
(Mon Aug 31 2009 - 23:10:41 PDT)
Ganesh Kamath
[AMBER] LJ-partial charges and force field parameters for ethylene glycol and glycerol
(Mon Sep 28 2009 - 10:03:13 PDT)
Re: [AMBER] solvent accessible surface area
(Wed Sep 23 2009 - 12:26:33 PDT)
[AMBER] solvent accessible surface area
(Wed Sep 23 2009 - 12:07:23 PDT)
[AMBER] question with hbond
(Wed Sep 16 2009 - 14:36:18 PDT)
[AMBER] radial distribution function in amber
(Mon Sep 14 2009 - 07:58:56 PDT)
[AMBER] question with radial distribution function
(Thu Sep 10 2009 - 15:08:34 PDT)
gaurav panwar
[AMBER] QM/MM minimization
(Thu Sep 10 2009 - 07:05:37 PDT)
[AMBER] problem in QM/MM input file
(Mon Sep 07 2009 - 10:33:20 PDT)
[AMBER] QM/MM simulation
(Thu Sep 03 2009 - 13:11:42 PDT)
Germain Vallverdu
[AMBER] dihedral force calculation
(Fri Sep 11 2009 - 07:35:08 PDT)
Gianluca Degliesposti
[AMBER] Question on ECAVITY term of MM_PBSA
(Mon Sep 21 2009 - 04:18:27 PDT)
[AMBER] Question on ECAVITY term of MM_PBSA
(Mon Sep 14 2009 - 08:28:12 PDT)
gilbert.bluemarble.net
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Tue Sep 22 2009 - 19:18:12 PDT)
[AMBER] gaff.dat questions
(Wed Sep 09 2009 - 07:02:28 PDT)
gunajyoti das
[AMBER] loading RNA sequence in xleap
(Thu Sep 17 2009 - 01:27:49 PDT)
[AMBER] loading PDB of a RNA sequence
(Tue Sep 08 2009 - 03:31:47 PDT)
[AMBER] (no subject)
(Mon Sep 07 2009 - 02:21:45 PDT)
Haining Liu
Re: [AMBER] Heme + Fe(II) + O2 + histidine parameter
(Thu Sep 03 2009 - 14:13:09 PDT)
[AMBER] Heme + Fe(II) + O2 + histidine parameter
(Wed Sep 02 2009 - 20:36:31 PDT)
Hannes Loeffler
Re: [AMBER] How to obtain amber top and crd from pdb file with POPE lipids?
(Mon Sep 28 2009 - 00:34:12 PDT)
Re: [AMBER] PROBLEM WITH CHCL3BOX pdb
(Fri Sep 18 2009 - 08:16:06 PDT)
Re: [AMBER] How to find water-mediated hydrogen bond?
(Thu Sep 03 2009 - 00:53:51 PDT)
helde010.umn.edu
[AMBER] logdvdl does not work
(Tue Sep 08 2009 - 09:53:14 PDT)
Ilyas Yildirim
Re: [AMBER] TI in Amber9/10
(Tue Sep 08 2009 - 11:07:40 PDT)
Ivan Gladich
Re: [AMBER] amoeba.prm problem?
(Fri Sep 18 2009 - 12:57:39 PDT)
Re: [AMBER] amoeba.prm problem?
(Fri Sep 11 2009 - 13:34:07 PDT)
[AMBER] amoeba.prm problem?
(Tue Sep 08 2009 - 07:31:43 PDT)
Jagdeesh C
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 18:55:36 PDT)
Re: [AMBER] loadpdb
(Mon Sep 07 2009 - 11:31:42 PDT)
[AMBER] loadpdb
(Mon Sep 07 2009 - 10:36:58 PDT)
Jeff Yeo
[AMBER] fatal "does not have a type" error in tleap for a protein-ligand complex
(Wed Sep 23 2009 - 16:24:51 PDT)
[AMBER] combining MD runs for post-MD analysis
(Sun Sep 20 2009 - 17:02:12 PDT)
[AMBER] warning in dispatchToken
(Sun Sep 20 2009 - 03:30:57 PDT)
RE: [AMBER] database
(Thu Sep 17 2009 - 14:01:48 PDT)
RE: [AMBER] parameterization of protein-ligand complex
(Mon Sep 14 2009 - 08:03:25 PDT)
Jeffrey
[AMBER] generate prmtop file from CHARMM psf file
(Mon Sep 21 2009 - 07:34:59 PDT)
[AMBER] question about ptraj
(Wed Sep 02 2009 - 01:20:12 PDT)
Jenny Iskrenova
Re: [AMBER] input file
(Thu Sep 10 2009 - 06:05:03 PDT)
Jia Xu
Re: [AMBER] problem with 4-Hydroxyl-Proline tutorial
(Mon Aug 31 2009 - 22:10:50 PDT)
Jihang Wang
[AMBER] partial charges in Amber force field
(Mon Sep 28 2009 - 10:52:28 PDT)
Jio M
[AMBER] LINMIN failure notice
(Fri Sep 18 2009 - 03:20:18 PDT)
[AMBER] re: charge consideration
(Mon Sep 14 2009 - 01:38:27 PDT)
[AMBER] re: charge interaction
(Sun Sep 13 2009 - 07:38:43 PDT)
[AMBER] charge consideration
(Fri Sep 11 2009 - 13:17:34 PDT)
Re: [AMBER] DMF solvent box
(Fri Sep 11 2009 - 08:00:40 PDT)
[AMBER] general query: implicit solvation
(Tue Sep 08 2009 - 02:28:49 PDT)
Re: [AMBER] nmropt option
(Fri Sep 04 2009 - 22:23:09 PDT)
[AMBER] nmropt option
(Fri Sep 04 2009 - 11:05:25 PDT)
[AMBER] prep file
(Fri Sep 04 2009 - 02:24:04 PDT)
Jose Borreguero
[AMBER] why should one restrain the position of the counterions?
(Mon Sep 28 2009 - 11:28:20 PDT)
[AMBER] how to ouput the electrostatic potential at a single atomic position?
(Thu Sep 17 2009 - 12:06:54 PDT)
Kamali Sripathi
Re: [AMBER] Problem with loading PDB into tleap
(Tue Sep 08 2009 - 06:49:20 PDT)
Karl Kirschner
[AMBER] install ambertools
(Thu Sep 17 2009 - 05:55:22 PDT)
Katrina Lexa
[AMBER] Gap in rst file
(Mon Sep 28 2009 - 07:47:43 PDT)
Keith Van Nostrand
[AMBER] QMMM NEB with PM3-PDDG fails with ASSERTion 'ierr.eq.0' pimd_init.f line 320
(Tue Sep 08 2009 - 12:26:14 PDT)
Kipras Redeckas
Re: [AMBER] Attaching a ligand to a protein residue.
(Sun Sep 27 2009 - 03:23:42 PDT)
[AMBER] Attaching a ligand to a protein residue.
(Fri Sep 25 2009 - 14:33:58 PDT)
Kshatresh Dutta Dubey
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 08:23:29 PDT)
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 08:14:35 PDT)
Re: [AMBER] Problem in test run
(Tue Sep 29 2009 - 08:05:13 PDT)
[AMBER] Problem in test run
(Tue Sep 29 2009 - 07:21:56 PDT)
Lin Xu
[AMBER] how to deal with aromatic nitro group with antechamber
(Wed Sep 02 2009 - 15:04:13 PDT)
Mag. Thomas Taylor
Re: [AMBER] input file / skinnb
(Wed Sep 16 2009 - 22:50:16 PDT)
Re: [AMBER] input file / skinnb
(Wed Sep 16 2009 - 00:49:32 PDT)
[AMBER] input file
(Thu Sep 10 2009 - 03:48:06 PDT)
[AMBER] AmberTools 1.3 / CHAMBER
(Tue Sep 08 2009 - 07:29:23 PDT)
Mahmoud A. A. Ibrahim
Re: [AMBER] parameter for manganese
(Thu Sep 24 2009 - 05:17:29 PDT)
Manish Kumar
Re: [AMBER] Parameter Problem
(Wed Sep 23 2009 - 06:28:11 PDT)
Mannan
[AMBER] How to remove Hydrogen using ptraj
(Tue Sep 01 2009 - 03:50:44 PDT)
manoj singh
[AMBER] Parameter Problem
(Tue Sep 22 2009 - 12:46:59 PDT)
[AMBER] Parameter Problem
(Tue Sep 22 2009 - 12:35:53 PDT)
Re: [AMBER] Cygwin Home Directory
(Fri Sep 18 2009 - 12:30:28 PDT)
Re: [AMBER] Force Field Fitting
(Thu Sep 17 2009 - 12:32:33 PDT)
Re: [AMBER] Force Field Fitting
(Thu Sep 17 2009 - 10:20:50 PDT)
[AMBER] Leap warning
(Tue Sep 08 2009 - 22:38:33 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
(Sun Sep 06 2009 - 22:46:54 PDT)
Re: [AMBER] R.E.D. : Gaussian Error
(Sun Sep 06 2009 - 21:22:44 PDT)
[AMBER] R.E.D. : Gaussian Error
(Sun Sep 06 2009 - 11:40:48 PDT)
Marek Maly
Re: [AMBER] Ki and G
(Tue Sep 15 2009 - 04:58:07 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 11:41:33 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 10:02:36 PDT)
Mari Carmen Pérez
[AMBER] error xleap: XaLeap_wcl is empty
(Mon Sep 14 2009 - 02:59:09 PDT)
Matthew Walsh
Re: [AMBER] antechamber bug: output of incorrect bond character
(Thu Sep 03 2009 - 08:15:00 PDT)
Re: [AMBER] antechamber bug: output of incorrect bond character
(Wed Sep 02 2009 - 21:30:04 PDT)
[AMBER] antechamber bug: output of incorrect bond character
(Wed Sep 02 2009 - 11:37:44 PDT)
Michael Durney
[AMBER] pH calculations
(Thu Sep 17 2009 - 08:01:08 PDT)
[AMBER] NAB syntax
(Thu Sep 17 2009 - 07:58:58 PDT)
[AMBER] RDC analysis: "No restraint defined"
(Wed Sep 16 2009 - 09:10:34 PDT)
nicholus bhattacharjee
Re: [AMBER] Changing pH of the system
(Tue Sep 01 2009 - 06:43:01 PDT)
Niel Henriksen
RE: [AMBER] question about ptraj
(Wed Sep 02 2009 - 07:37:39 PDT)
null
Re:Re: [AMBER] No restrt file
(Wed Sep 30 2009 - 04:39:24 PDT)
oguz gurbulak
Re: [AMBER] Installing AmberTools and Amber10 in Ubuntu - Instructions.
(Mon Sep 21 2009 - 23:46:27 PDT)
Re: [AMBER] load .crd & .top in xleap
(Sun Sep 13 2009 - 12:20:26 PDT)
Oliver Kuhn
[AMBER] trouble using iAPBS
(Mon Sep 28 2009 - 05:08:27 PDT)
Re: [AMBER] problem building sander.apbs
(Tue Sep 22 2009 - 01:10:10 PDT)
Re: [AMBER] problem building sander.apbs
(Mon Sep 21 2009 - 07:03:34 PDT)
[AMBER] problem building sander.apbs
(Mon Sep 21 2009 - 03:49:48 PDT)
Pansy Patel
Re: [AMBER] QM/MM minimization
(Thu Sep 10 2009 - 07:09:48 PDT)
parul sharma
[AMBER] how to make 50% aqueous TFE box?
(Fri Sep 18 2009 - 06:47:01 PDT)
Paul Ledbetter
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
(Tue Sep 15 2009 - 16:40:09 PDT)
Re: [AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
(Tue Sep 15 2009 - 16:34:54 PDT)
[AMBER] can antechamber convert a prep file from cartesian to internal coordinates?
(Tue Sep 15 2009 - 13:25:56 PDT)
Pradipta Bandyopadhyay
[AMBER] Problem in compiling AMBER9 in parallel !
(Tue Sep 29 2009 - 06:04:47 PDT)
qiaoyan
[AMBER] No sp2 improper torsion term for NB-CA-CB-CB
(Tue Sep 08 2009 - 05:29:17 PDT)
Qinghua Liao
Re: [AMBER] Ewald error estimated
(Fri Sep 25 2009 - 00:48:14 PDT)
Re: [AMBER] combining MD runs for post-MD analysis
(Sun Sep 20 2009 - 18:01:22 PDT)
[AMBER] about the number of residues after MD
(Wed Sep 09 2009 - 00:23:03 PDT)
Re: [AMBER] problem of PBCAL/GB
(Tue Sep 08 2009 - 02:40:42 PDT)
[AMBER] problem of PBCAL/GB
(Mon Sep 07 2009 - 22:05:37 PDT)
Ray Luo
Re: [AMBER] problem when doing mm/pbsa: bad atom type Br
(Sun Sep 27 2009 - 20:10:25 PDT)
Re: [AMBER] Question on ECAVITY term of MM_PBSA
(Mon Sep 21 2009 - 18:28:32 PDT)
Re: [AMBER] Regarding united atom force field
(Mon Sep 21 2009 - 10:32:34 PDT)
Re: [AMBER] Question on ECAVITY term of MM_PBSA
(Mon Sep 21 2009 - 10:30:57 PDT)
Re: [AMBER] PBSA for gp41 binding free energy
(Fri Sep 11 2009 - 18:59:07 PDT)
Re: [AMBER] problem of PBCAL/GB
(Mon Sep 07 2009 - 22:58:44 PDT)
Re: [AMBER] Dummy atoms and MM-PBSA
(Fri Sep 04 2009 - 11:25:33 PDT)
Rilei Yu
Re: [AMBER] apbs-amber
(Tue Sep 22 2009 - 18:41:08 PDT)
[AMBER] apbs-amber
(Tue Sep 22 2009 - 15:58:40 PDT)
回复： [AMBER] Problem about adding a small residue to DNA
(Thu Sep 03 2009 - 23:33:50 PDT)
Re: [AMBER] Simulation short peptide and protein interaction
(Thu Sep 03 2009 - 05:22:10 PDT)
[AMBER] Simulation short peptide and protein interaction
(Tue Sep 01 2009 - 17:50:29 PDT)
Robert Duke
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 15:19:10 PDT)
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 13:10:57 PDT)
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 09:07:06 PDT)
Re: [AMBER] Ewald error estimated
(Fri Sep 25 2009 - 08:50:18 PDT)
Re: [AMBER] input file / skinnb
(Wed Sep 16 2009 - 07:23:06 PDT)
Re: [AMBER] Problem on PMEMD
(Mon Sep 14 2009 - 18:46:16 PDT)
Robert Konecny
Re: [AMBER] trouble using iAPBS
(Mon Sep 28 2009 - 07:20:31 PDT)
Re: [AMBER] apbs-amber
(Tue Sep 22 2009 - 16:18:28 PDT)
Re: [AMBER] problem building sander.apbs
(Tue Sep 22 2009 - 12:55:40 PDT)
Roman Osman
Re: [AMBER] Zinc
(Tue Sep 29 2009 - 17:08:28 PDT)
Rose Tamil
[AMBER] Reg. snapshot_statistics.out.snap
(Tue Sep 01 2009 - 10:04:08 PDT)
Rosina Noto
[AMBER] Your help about ptraj in AmberTools!]]
(Mon Sep 28 2009 - 02:59:09 PDT)
Ross Walker
RE: [AMBER] LINMIN failure notice
(Fri Sep 18 2009 - 16:41:33 PDT)
RE: [AMBER] About the PMEMD compiling for CUDA
(Tue Sep 15 2009 - 23:55:11 PDT)
[AMBER] About the PMEMD compiling for CUDA
(Tue Sep 15 2009 - 22:26:19 PDT)
[AMBER] Provisional Support for AMBER 10 PMEMD on NVIDIA GPUs
(Fri Sep 04 2009 - 11:51:44 PDT)
RE: [AMBER] QM/MM simulation
(Thu Sep 03 2009 - 13:43:45 PDT)
RE: [AMBER] symbol lookup error
(Tue Sep 01 2009 - 12:42:49 PDT)
RE: [AMBER] ACE and NME patch: VMD ???
(Tue Sep 01 2009 - 10:54:38 PDT)
Rubben Torella
Re: [AMBER] Zinc
(Tue Sep 29 2009 - 14:31:31 PDT)
s. Bill
Re: [AMBER] Force Field Fitting
(Thu Sep 17 2009 - 12:27:46 PDT)
[AMBER] Force Field Fitting
(Thu Sep 17 2009 - 04:36:33 PDT)
[AMBER] PES QM and MM
(Thu Sep 17 2009 - 03:53:46 PDT)
[AMBER] Ki and G
(Mon Sep 14 2009 - 04:39:20 PDT)
[AMBER] RESP RED
(Fri Sep 11 2009 - 11:40:24 PDT)
[AMBER] Active site - Ion - Search engine
(Wed Sep 02 2009 - 07:53:39 PDT)
Sam Danziger
Re: [AMBER] how to pull a dna
(Tue Sep 01 2009 - 04:17:09 PDT)
Sel Ercan
[AMBER] Zinc
(Tue Sep 29 2009 - 14:26:53 PDT)
Sergey Samsonov
Re: [AMBER] ATP and GTP parameters
(Wed Sep 02 2009 - 23:35:33 PDT)
Serguei Vassiliev
Re: [AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 12:47:46 PDT)
[AMBER] pmemd and internal dielectric
(Fri Sep 25 2009 - 08:47:50 PDT)
Shulin Zhuang
Re: [AMBER] Hbond analysis: Direction of the hydrogen
(Tue Sep 08 2009 - 12:54:22 PDT)
shuqing wang
[AMBER] PBSA for gp41 binding free energy
(Thu Sep 10 2009 - 23:42:59 PDT)
Siddharth Rastogi
[AMBER] ACE and NME patch: VMD ???
(Mon Aug 31 2009 - 17:25:47 PDT)
Silvia Carlotto
[AMBER] PROBLEM WITH CHCL3BOX pdb
(Fri Sep 18 2009 - 05:49:12 PDT)
Soumya Lipsa Rath
Re: [AMBER] Kinetics
(Mon Sep 07 2009 - 23:36:18 PDT)
[AMBER] Kinetics
(Thu Sep 03 2009 - 23:39:54 PDT)
steinbrt.rci.rutgers.edu
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 13:09:55 PDT)
Re: [AMBER] Ki and G
(Mon Sep 14 2009 - 04:59:40 PDT)
Re: [AMBER] TI in Amber9/10
(Tue Sep 08 2009 - 10:41:32 PDT)
Re: [AMBER] logdvdl does not work
(Tue Sep 08 2009 - 10:37:31 PDT)
stephane acoca
[AMBER] variable header for ABMD
(Sun Sep 13 2009 - 20:03:00 PDT)
Steve Seibold
RE: [AMBER] database
(Fri Sep 18 2009 - 12:10:19 PDT)
RE: [AMBER] database
(Fri Sep 18 2009 - 08:03:44 PDT)
RE: [AMBER] database
(Thu Sep 17 2009 - 12:46:20 PDT)
RE: [AMBER] database
(Thu Sep 17 2009 - 06:43:25 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 10:14:46 PDT)
RE: [AMBER] database
(Wed Sep 16 2009 - 09:11:47 PDT)
[AMBER] database
(Wed Sep 16 2009 - 07:59:14 PDT)
RE: [AMBER] ATP/GTP parameters
(Tue Sep 01 2009 - 09:29:59 PDT)
RE: [AMBER] ATP/GTP parameters
(Tue Sep 01 2009 - 04:42:09 PDT)
Sunita Patel
[AMBER] Discrepancy between AMBER and VMD calculation
(Thu Sep 17 2009 - 12:11:07 PDT)
Syed Tarique Moin
[AMBER] RMSDf of heavy atoms
(Tue Sep 22 2009 - 04:45:26 PDT)
Taufik Al-Sarraj
Re: [AMBER] antechamber error
(Wed Sep 16 2009 - 12:11:26 PDT)
Re: [AMBER] antechamber error
(Wed Sep 16 2009 - 11:52:26 PDT)
[AMBER] antechamber error
(Wed Sep 16 2009 - 11:18:32 PDT)
Thomas Cheatham III
Re: [AMBER] How to remove Hydrogen using ptraj
(Tue Sep 01 2009 - 10:25:10 PDT)
Re: [AMBER] How to remove Hydrogen using ptraj
(Tue Sep 01 2009 - 08:55:43 PDT)
Tom Joseph
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 09:08:33 PDT)
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 08:43:42 PDT)
Re: [AMBER] Installation issue
(Wed Sep 23 2009 - 08:35:44 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Tue Sep 22 2009 - 17:18:17 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 11:16:01 PDT)
Re: [AMBER] ambertools and Snow Leopard 64 bits kernel
(Tue Sep 22 2009 - 11:12:55 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 10:41:51 PDT)
Re: [AMBER] Installation issue
(Tue Sep 22 2009 - 09:55:20 PDT)
Re: [AMBER] Problem on PMEMD
(Mon Sep 14 2009 - 18:34:11 PDT)
Re: [AMBER] problem in QM/MM input file
(Tue Sep 08 2009 - 05:37:56 PDT)
Re: [AMBER] loadpdb
(Tue Sep 08 2009 - 05:31:56 PDT)
vallespardojl.chem.leidenuniv.nl
[AMBER] load .crd & .top in xleap
(Sun Sep 13 2009 - 07:21:15 PDT)
[AMBER] Solvate in an alkaline solution
(Thu Sep 10 2009 - 01:07:07 PDT)
Wallace Kunin
Re: [AMBER] Cygwin Home Directory
(Mon Sep 21 2009 - 09:29:11 PDT)
Re: [AMBER] Cygwin Home Directory
(Sat Sep 19 2009 - 09:13:20 PDT)
Re: [AMBER] Cygwin Home Directory
(Fri Sep 18 2009 - 12:12:22 PDT)
[AMBER] Cygwin Home Directory
(Fri Sep 18 2009 - 10:51:17 PDT)
wang
[AMBER] About the PMEMD compiling for CUDA
(Tue Sep 15 2009 - 22:17:52 PDT)
Re: [AMBER] ATP/GTP parameters
(Mon Aug 31 2009 - 22:02:08 PDT)
Williams, John
[AMBER] Compiling Amber10
(Tue Sep 22 2009 - 05:56:43 PDT)
wong105.llnl.gov
[AMBER] problem running pmemd gbrna tests
(Tue Sep 15 2009 - 11:07:14 PDT)
Workalemahu Berhanu
Re: [AMBER] makeDIST_RST: no map function
(Tue Sep 15 2009 - 08:24:56 PDT)
Re: [AMBER] makeDIST_RST: no map function
(Tue Sep 15 2009 - 08:11:27 PDT)
[AMBER] makeDIST_RST: no map function
(Mon Sep 14 2009 - 12:30:15 PDT)
[AMBER] periodic boundary condition for implicit solvent simulation and SHORT command
(Thu Sep 10 2009 - 15:37:32 PDT)
XIAOHUICANG
[AMBER] group distance restraint
(Tue Sep 22 2009 - 12:36:03 PDT)
xuemeiwang1103
[AMBER] No restrt file
(Wed Sep 30 2009 - 02:32:38 PDT)
[AMBER] Ewald error estimated
(Thu Sep 24 2009 - 20:01:05 PDT)
[AMBER] Ewald error estimated
(Thu Sep 24 2009 - 20:01:02 PDT)
Re:Re: [AMBER] Error in minimal
(Tue Sep 15 2009 - 06:54:58 PDT)
[AMBER] Error in minimal
(Tue Sep 15 2009 - 00:27:18 PDT)
[AMBER] How to prepare the coordinate and toplogy files in leap ?
(Mon Sep 14 2009 - 02:03:59 PDT)
xueqin pang
[AMBER] too many missing parameters in frcmod for the prep of my ligand
(Wed Sep 30 2009 - 02:21:31 PDT)
Yikan Chen
[AMBER] "nan" in gaussian input files generated by antechamber
(Fri Sep 11 2009 - 13:19:04 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Sun Sep 06 2009 - 08:47:04 PDT)
[AMBER] Antechamber generate a prep file in a wrong order...
(Sat Sep 05 2009 - 12:37:53 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Fri Sep 04 2009 - 14:38:27 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Fri Sep 04 2009 - 13:03:54 PDT)
Re: 回复： [AMBER] Problem about adding a small residue to DNA
(Fri Sep 04 2009 - 12:51:38 PDT)
[AMBER] Problem about adding a small residue to DNA
(Thu Sep 03 2009 - 21:33:52 PDT)
Yuqin Cai
[AMBER] parameter for manganese
(Tue Sep 22 2009 - 15:48:41 PDT)
Zhongjie Liang
[AMBER] MM_PBSA
(Tue Sep 29 2009 - 18:30:40 PDT)
zyxism
Re: Re: [AMBER] Problem on PMEMD
(Mon Sep 14 2009 - 18:41:50 PDT)
[AMBER] Problem on PMEMD
(Mon Sep 14 2009 - 18:11:57 PDT)
Last message date
:
Wed Sep 30 2009 - 05:30:02 PDT
Archived on
: Fri Apr 26 2024 - 05:53:57 PDT
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