Hi Francois,
I'd be also very grateful if you could send the link to all these
nucleotides libraries.
Thank you very much,
Sergey
E.M. wrote:
> Oh my!, do you have both?. This is even better =-O
> both states are great, although I will try first -2.
> I basically need to bind. ATP, ADP, GTP, GDP, AMP /GMP is not so
> useful now, but if you have them do share.
> which paper do I quote?.
>
> Regards
>
> Eduardo
> FyD wrote:
>> Eduardo,
>>
>>> I was wondering if anyone can supply parameters for the phosphates XYP
>>> with X={A,G}, Y={T,D,M} other than those
>>> found in http://www.pharmacy.manchester.ac.uk/bryce/amber
>>> I heard somebody has the parameters compatible with ff03, would you
>>> care to share those?
>>
>> ok no problem.
>>
>> Do you need dexoxyribose or ribose ?
>> Which protonation state for each terminal phosphate ? -2 or -1 ?
>>
>> regards, Francois
>>
>>
>>
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>>
>
>
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Received on Thu Sep 03 2009 - 00:00:06 PDT
