Re: [AMBER] loading PDB of a RNA sequence

From: Carlos Simmerling <carlos.simmerling.gmail.com>
Date: Tue, 8 Sep 2009 11:33:57 +0100

it would be easier to help you if we could see the error messages generated by leap- check the leap.log file. On Tue, Sep 8, 2009 at 6:31 AM, gunajyoti das<guna_das78.yahoo.co.in> wrote: > Hello amber users' >  I have tried to load a RNA sequence obtained from the PDB file 1DRZ, but xleap colud not generate the prmtop and inpcrd files. When i tried a DNA sequence i could generate the prmtop and inpcrd files. >  Please help me how to write the commands for a RNA sequence. > >                                                                     Thanks  a lot, >                                                                                        Gunajyoti >                                                                                         NEH University. > > > > > > > > > > > > > > > > > > > > > > > > > > > > >      See the Web's breaking stories, chosen by people like you. Check out Yahoo! Buzz. http://in.buzz.yahoo.com/ > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber >
Received on Mon Sep 14 2009 - 13:34:05 PDT
Custom Search