RE: [AMBER] parameterization of protein-ligand complex

From: cc cc <weekiang.live.com>
Date: Wed, 9 Sep 2009 18:44:17 +0100

> Don't do this! You want something like loadAmberPrep mylig.prepi (or, load
> a mol2 or off file). Loading the pdb file does *not* establish the data
> structures tleap needs. (For example, there are no atom types in pdb
> files...)
>
> ....dac

Thanks for the suggestion. I have tried it and the same atoms (ligand atoms) produced the same 'fatal' error messages.
_________________________________________________________________
Drag n’ drop—Get easy photo sharing with Windows Live™ Photos.

http://www.microsoft.com/windows/windowslive/products/photos.aspx
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 14 2009 - 13:38:26 PDT
Custom Search