See but try not to delete the lines simply. It may be due to the
unavailability of the proper parameter files for the residue
topologies.
So load the proper leaprc force field definition files for such
information. Then try seeing it all.
On 9/8/09, Kamali Sripathi <ksripath.umich.edu> wrote:
> Thanks a lot, Ashish and case. Actually, I managed to fix my problems by
> just deleting the lines that AMBER inserted itself. That seems to have
> worked.
>
> Thank you again for your help!
>
> Kamali
>
> On Wed, Aug 19, 2009 at 10:53 PM, Ashish Runthala <ashish.runthala.gmail.com
>> wrote:
>
>> Attach the pdb which illustrates the matter. I have seen such problems
>> and i have solved them.
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>>
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Ashish Runthala,
Faculty Division III,
Assistant Lecturer, Biological Sciences,
Birla Institute of Technology and Science,
Pilani, Rajasthan- 333031
INDIA
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Received on Mon Sep 14 2009 - 13:35:00 PDT
