Re: [AMBER] how to pull a dna

From: Sam Danziger <sam.danziger.gmail.com>
Date: Tue, 1 Sep 2009 12:17:09 +0100

I recommend using MMTSB to prep pdb files before simulation in Amber.

Here is a tutorial:
http://www.mmtsb.org/workshops/mmtsb-ctbp_workshop_2009/Tutorials/MMTSB_InitialSetup/MMTSBInitialSetup.html

-Sam

On Mon, Aug 31, 2009 at 7:39 PM, balaji
nagarajan<balaji_sethu.hotmail.com> wrote:
>
> Dear Amber !
>
>        I would like to pull one of the strands of the DNA from the helix ,
> how to do it using amber , if there is any reference for this if so let me know
>
> thanks in advance
>
> regards
> balaji
>
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-- 
Samuel A. Danziger, PhD
Dept. of Biomedical Engineering
University of California
Irvine, CA 92697
sdanzige.uci.edu
(908)246-4502
http://samdanziger.com/
Truth Cannot Contradict Truth
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Received on Wed Sep 02 2009 - 23:07:11 PDT
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