Dear Sir/Madam,
After running PCA, I got two files (xxx.pev and xxx.ppj). I could like to ask if I want to calculate % of total protein motions described by the first eigenvector, what should I do? What is the meaning of the numbers in these two files?
Bset regards & many thanks,
Cat
The xxx.pev files starts with
---------------------------------------------------------------------------
Eigenvector
file:
COVAR
1695
1695
73.10704
42.51491
65.46974
73.51263
45.08371
64.03552
75.46584
44.06115
61.03077
76.46655
46.93481
58.74557
76.09958
45.09636
...........
--------------------------------------------------------------------------
The xxx.ppj files starts with
-----------------------------------------------------------------------------------
Projection
of
snapshots
onto
modes
Snapshot
Mode1
Mode2
Mode3
Mode4
Mode5
Mode6
Mode7
Mode8
Mode9
Mode10
1
-26.927
24.853
5.978
-0.671
-3.39
16.009
2.134
1.791
-6.824
0.177
2
-27.408
24.742
3.341
-0.199
-4.45
17.883
0.757
3.522
-7.053
-1.57
3
-27.11
26.452
3.71
0.511
-3.956
17.529
0.793
1.711
-6.518
-0.177
4
-27.994
25.609
4.671
0.121
-3.586
16.577
0.261
2.362
-5.53
0.835
5
-26.922
26.545
6.5
-0.496
-4.567
16.954
2.366
2.107
-4.384
1.03
6
-28.509
24.969
8.291
0.139
-3.417
16.243
1.178
2.262
-4.706
0.511
--------------------------------------------------------------------------------------------------------------------
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Received on Wed Sep 02 2009 - 23:07:18 PDT
