Dear Amber,
I'm a new subscriber of this mail list.
When I did Nucleic Acid Simulation with PMEMD, using ff99 forcefield(modified with bsc0 and ion parameters ionsjc_tip3p),I made 300 scripts , 0.1ns each. But when the simulation was prolonged to about 15ns, the simulation was stopped, and the system message was like this :
rank 0 in job 271 local.localdomain 56517 caused collective abort of all ranks
exit status of rank 0:killed by signal 9
Is there something wrong with my scripts or with the use of forcefield?
Zheng
zyxism
2009-09-15
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Received on Mon Sep 14 2009 - 18:30:02 PDT
