Amber Archive Jan 2004 by subject
- AMBER:
- AMBER: "ATTN, need revision"
- AMBER: (No subject)
- AMBER: .crg file for Delphi
- AMBER: A few questions in the protein unfolding simulations using GB model
- AMBER: algorithm used in AMBER
- AMBER: Amber compilation in IBM-SP4
- AMBER: AMBER on IBM SP cluster
- AMBER: ambpdb in AMBER7
- AMBER: Antechamber & Ptraj/Rdparm
- AMBER: antechamber and mopac5010mn
- AMBER: Atom type
- AMBER: atom type CM
- AMBER: B factors --- one more explanation
- AMBER: B factors from simulation and from cryst
- AMBER: Cartitian Restraint Error
- AMBER: compilation under fedora core 1
- AMBER: conversion of amber trajectories to gromos /(xtc)
- AMBER: crosslink a residue with a small molecule
- AMBER: crystal lattice determination
- AMBER: CYS, CYX and CYM
- AMBER: dielectric constant
- AMBER: disulfide bonds
- AMBER: disulfide bonds/ Engineered
- AMBER: DMF box
- AMBER: Do I need to repeat MD simulation?
- AMBER: error in minimization
- AMBER: Error message in antechamber
- AMBER: Errors in MM-PBSA???
- AMBER: File format generated by respgen
- AMBER: force field
- AMBER: free energy profile calculation
- AMBER: Fwd: NVE & polarizable force field]
- AMBER: GB and Atom Type
- AMBER: How does LEaP place Na+ ions?
- AMBER: how to correctly change frcmod?
- AMBER: Ibelly and Ewald error message when ewald should be off
- AMBER: Improper dihedral
- AMBER: Installing Amber on IBM AIX cluster
- AMBER: Intel Fortran Compiler 8.0 / pmemd 3.1 warning
- AMBER: Lattice structures in xleap
- AMBER: LEAP - Error loading units
- AMBER: LES error
- AMBER: LES question
- AMBER: LES Simulations
- AMBER: Memory for AMBER 6 simulation
- AMBER: Minimiation (AMBER5/AMBER7) does not reach the tageted rmsd
- AMBER: modeling GPCR in lipid environment
- AMBER: Moil View on Linux
- AMBER: Molecular Frame
- AMBER: mopac.sh
- AMBER: NMODE via MM-PBSA
- AMBER: Normal modes of protein-ligand
- AMBER: Nose Hoover chain thermostat
- AMBER: NTF
- AMBER: NTR force constant for restraint !!
- AMBER: oxs g5 machine file
- AMBER: oxygen positions around a DNA
- AMBER: Parameters for deuterium
- AMBER: Parm98 Vs 02
- AMBER: PDB files
- AMBER: phosphothreonine
- AMBER: prep file
- AMBER: prep file for zinc finger
- AMBER: Problem using GLYCAM with sander
- AMBER: question about LES simulation
- AMBER: Question for PMEMD users
- AMBER: Radius of gyration
- AMBER: references?
- AMBER: remove rotational motion
- AMBER: restraint
- AMBER: restrt
- AMBER: rms in ptraj
- AMBER: running on Itanium machines
- AMBER: SANDER - Abnormal high velocities
- AMBER: sander and mpich
- AMBER: sander and mpich (which compilers/mpich work)
- AMBER: sander.LES on IBM SP cluster
- AMBER: Segmentation fault (core dumped) error of antechamber program
- AMBER: segmentation fault in Leap
- AMBER: strange output of MD
- AMBER: test
- AMBER: trajectory file corruption
- AMBER: Unknown Amber Nomeclature
- AMBER: Vlimit problem
- AMBER: Which program to use to visualize the RESP Outputs
- AMBER: Which program to use to visualize the RESP Outputs derived by AMBER 7
- AMBER: XLEAP
- Last message date: Sat Jan 31 2004 - 23:53:00 PST
- Archived on: Fri Dec 20 2024 - 05:53:22 PST
