AMBER: Nose Hoover chain thermostat

From: Byungchan Kim <bk385.columbia.edu>
Date: Fri, 30 Jan 2004 20:35:08 -0500 (EST)

I have a general question about NVT dynamics using Nose Hoover chain
thermostating method.
1. Say, I want to set thermostat chain for each atom or each degree of
freedom.
Then, what thermostat frequency which will determine themostat mass should
I use? Is there any set rule for this?

2. Unless I use correct frequency, can't I see the conserved quantity
conserved?

I am looking forward to wise answers.

Thank you.

Byungchan Kim


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Received on Sat Jan 31 2004 - 01:53:00 PST
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