AMBER: NMODE via MM-PBSA

From: ML <lepsik.uochb.cas.cz>
Date: Wed, 21 Jan 2004 13:03:31 +0100

Hello AMBER team!!!
Is there any way to do nmode calculations via mm-pbsa stepwise? I mean
steep desc+conj.grad. mini in sander, then Newt-Raph mini in nmode, then
normal modes in nmode. What it does now is passing minimization commands
to sander and urging nmode to do normal mode analysis, not Newt-Rap.

I'd very much appreciate your help.

Sincerely,

Martin Lepsik 

-- 
-----------
Martin Lepsik
Dept. of Molecular Modeling
Institute of Organic Chemistry & Biochemistry
Czech Academy of Sciences
phone: +420-220 183 540
fax:+420-220 183 292
e-mail:lepsik.uochb.cas.cz
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Received on Wed Jan 21 2004 - 12:53:01 PST
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