ML schrieb:
>
> Dear AMBER community,
> as I'm running mm_pbsa calculations I get the following messages
> irrespective of whether the calculation completes or fails. Is it some
> serious problem or bad compilation? Does it affect the results?
>From an older answer to a related question:
>>>>>
the reason for the messages below is that earlier versions of perl
(under which the mm_pbsa scripts were developed) than v.5.8.0 allowed
to
have alphanumeric characters in function prototypes, while the latest
one does not anymore (i.e. "sub foo(.array)" was allowed, while now it
must be "sub foo(.)"). The documentation of 5.8.0 says that at the
moment "just" an optional warning is generated, which may become a
fatal
error in future releases.
<<<<<
As far as I know, it shouldn't affect the results.
Best regards
Holger
>
> Thanks for your replies.
>
> Regards,
>
> Martin Lepsik
> --------
> Illegal character in prototype for mm_pbsa_statistics::calc_stat :
> \%GEN,\%DEC,\%DEL,\%GBO,\%PRO at
> /usr/local/programs/amber7-large/src/mm_pbsa/mm_pbsa_statistics.pm line 274.
>
> --
> Using an array as a reference is deprecated at /usr/local/programs/amber7-large/src/mm_pbsa/mm_pbsa_statistics.pm line 648.
> -----
> Illegal character in prototype for mm_pbsa_statistics::mm_pbsa_stat : $calc_delta,$calc_dec,$input,$output,$snap_min,$snap_max at /usr/local/programs/amber7-large/src/mm_pbsa/mm_pbsa_statistics.pm line 352.
>
> Illegal character in prototype for main::check_sanity : \%GEN,\%DEC,\%DEL,\%GBO,\%MOL,\%NMO,\%MAK,\%PRO,\$TRA at /usr/local/programs/amber7-large/exe/mm_pbsa.pl line 379.
>
> -----------
> Martin Lepsik
> Dept. of Molecular Modeling
> Institute of Organic Chemistry & Biochemistry
> Czech Academy of Sciences
> phone: +420-220 183 540
> fax:+420-220 183 292
> e-mail:lepsik.uochb.cas.cz
>
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--
++++++++++++++++++++++++++++++++++++++++++++++++++
Dr. Holger Gohlke
Juniorprofessur fuer Molekulare Bioinformatik
J.W. Goethe-Universität
Fachbereich Biologie und Informatik
Institut für Mikrobiologie
Marie-Curie-Str. 9
60439 Frankfurt/Main
Germany
Tel.: (+49) 69-798-29503; Fax: (+49) 69-798-29826
Email: gohlke.bioinformatik.uni-frankfurt.de
URL: http://www.rz.uni-frankfurt.de/~hgohlke
++++++++++++++++++++++++++++++++++++++++++++++++++
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Received on Wed Jan 21 2004 - 12:53:01 PST
