Re: AMBER: prep file

From: Bill Ross <>
Date: Mon, 5 Jan 2004 15:49:14 -0800 (PST)

> I made a prepin file for a modified ASP residue. When I loaded into
> leap, I got the message " 0 pairs of atoms within potential bonding
> distance, 0 are not H-H pairs". What does this mean?

Possibly the coordinates in your prepin file are misaligned in
format or wrong. It sounds like the atoms are too far apart to
create any plausible bonds.

Bill Ross

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Received on Wed Jan 14 2004 - 15:53:14 PST
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