Re: AMBER: trajectory file corruption

From: Peter Oelschlaeger <poe.caltech.edu>
Date: Tue, 27 Jan 2004 10:27:44 -0800

Dear John,

I had problems when loading Amber 7 trajectories, too. The solution was
very simple: load parm7 and crdbox file types. In other words, you just
need to load the right format.
I don't know if that will fix your problem, though....

Regards,

Peter

John wrote:

>Hello All,
>
>I successfully completed a 500ps production MD. The pdb file I created using
>the rst file looks reasonable in VMD. When I tried to use the trajectory
>file VMD could not read the file. After opening it I realised that it has
>been totally corrupted and has nothing to do with a normal molecular
>dynamics trajectory file. Here are some ghastly details of the file: " =.
>7rU0.9pXA.~V~B:.^Dq>&2.\0^\Sy..~X^L=:.~U%~O_~K2./~YXZA.<'
>jCM:.~I^"
>
>Any idea what is the cause of this?
>
>Many thanks for your help.
>
>Best wishes,
>
>John
>
>
>
>-----------------------------------------------------------------------
>The AMBER Mail Reflector
>To post, send mail to amber.scripps.edu
>To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
>
>
>
>

-- 
**************************************************
Peter Oelschlaeger, Ph.D.
Mayo lab, Division of Biology, Caltech
1200 E. California Blvd., mail code 114-96
Pasadena, CA 91125-9600
Phone: 	(626) 395-8085, Lab: (626) 395-6407
Fax:	(626) 440-7231
Email:	poe.caltech.edu
http://www.mayo.caltech.edu
**************************************************
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Tue Jan 27 2004 - 18:53:01 PST
Custom Search