Amber Archive Jan 2009 by subject
433 messages
:
Starting
Fri Jan 02 2009 - 01:18:40 PST,
Ending
Sun Feb 01 2009 - 01:22:26 PST
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[AMBER] "bad atom type"
Akansha Saxena
(Fri Jan 09 2009 - 09:15:11 PST)
[AMBER] "Could not find bond parameter"
Ross Walker
(Fri Jan 23 2009 - 10:29:46 PST)
George Tzotzos
(Fri Jan 23 2009 - 10:16:34 PST)
[AMBER] (no subject)
Ross Walker
(Thu Jan 22 2009 - 07:46:56 PST)
Lake, Thomas
(Thu Jan 22 2009 - 05:43:59 PST)
Jenny Iskrenova
(Mon Jan 19 2009 - 10:54:39 PST)
Ross Walker
(Sun Jan 18 2009 - 10:07:24 PST)
Carlos Simmerling
(Sun Jan 18 2009 - 05:08:41 PST)
David A. Case
(Sat Jan 17 2009 - 18:48:25 PST)
Jenny Iskrenova
(Fri Jan 16 2009 - 15:20:46 PST)
David A. Case
(Fri Jan 16 2009 - 11:10:33 PST)
Carlos Simmerling
(Fri Jan 16 2009 - 10:46:11 PST)
Jenny Iskrenova
(Fri Jan 16 2009 - 10:42:08 PST)
Carlos Simmerling
(Fri Jan 16 2009 - 09:43:26 PST)
Lake, Thomas
(Fri Jan 16 2009 - 09:38:09 PST)
[AMBER] adding MG2 problem
balaji nagarajan
(Fri Jan 30 2009 - 01:45:58 PST)
[AMBER] Alpha helix plot
Carlos Simmerling
(Fri Jan 30 2009 - 14:11:10 PST)
Beale, John
(Thu Jan 29 2009 - 12:10:11 PST)
[AMBER] Amber 9 installation problem on Ubuntu
David A. Case
(Mon Jan 12 2009 - 04:01:31 PST)
drugdesign
(Sun Jan 11 2009 - 22:26:34 PST)
[AMBER] AMBER efficiency: Intel vs. AMD
Ross Walker
(Mon Jan 19 2009 - 07:39:33 PST)
Ye MEI
(Sun Jan 18 2009 - 18:20:47 PST)
Swarup Gupta
(Sun Jan 18 2009 - 17:43:32 PST)
[AMBER] AMBER External keyword
Gustavo Seabra
(Sat Jan 24 2009 - 18:32:10 PST)
Mahmoud A. A. Ibrahim
(Wed Jan 21 2009 - 07:59:33 PST)
[AMBER] Amber Parameters for Iron Heme covalently boud to carbon monoxide
Osmar Norberto de Souza
(Wed Jan 07 2009 - 10:23:06 PST)
[AMBER] Amber top file to Charmm top file
sarvin moghaddam
(Fri Jan 30 2009 - 06:48:44 PST)
[AMBER] amber.ambermd.org open for business
Ross Walker
(Tue Jan 06 2009 - 15:34:31 PST)
[AMBER] amber9 in fedora10
Eric
(Tue Jan 13 2009 - 10:28:33 PST)
Bala subramanian
(Tue Jan 13 2009 - 10:16:19 PST)
Ross Walker
(Tue Jan 13 2009 - 10:00:33 PST)
Mark Williamson
(Tue Jan 13 2009 - 09:56:31 PST)
Bala subramanian
(Tue Jan 13 2009 - 09:51:49 PST)
[AMBER] AMBER: Problems in solvation with xleap
vallespardojl.chem.leidenuniv.nl
(Wed Jan 07 2009 - 05:39:56 PST)
[AMBER] AmberTools 1.2
David A. Case
(Fri Jan 30 2009 - 04:04:41 PST)
James W. Caldwell
(Thu Jan 29 2009 - 16:04:36 PST)
[AMBER] AmberTools and ptraj clustering on Mac OS X
David Watson
(Sat Jan 24 2009 - 13:41:04 PST)
[AMBER] ambpdb is changing atom names, a feature or bug?
David A. Case
(Sat Jan 10 2009 - 08:02:53 PST)
Ye Mei
(Sat Jan 10 2009 - 00:03:10 PST)
David A. Case
(Fri Jan 09 2009 - 10:58:20 PST)
Bill Ross
(Fri Jan 09 2009 - 09:53:23 PST)
David A. Case
(Fri Jan 09 2009 - 05:01:54 PST)
Markus Kaukonen
(Fri Jan 09 2009 - 04:55:41 PST)
[AMBER] analysis
Adrien Delmont
(Tue Jan 20 2009 - 09:03:16 PST)
[AMBER] antechamber : missed atoms
David A. Case
(Tue Jan 27 2009 - 07:23:27 PST)
Khaled Barakat
(Mon Jan 26 2009 - 12:22:14 PST)
Sean Johnston
(Mon Jan 26 2009 - 11:40:59 PST)
Khaled Barakat
(Mon Jan 26 2009 - 11:20:52 PST)
Khaled Barakat
(Mon Jan 26 2009 - 11:15:33 PST)
Khaled Barakat
(Mon Jan 26 2009 - 10:54:07 PST)
[AMBER] antechamber cation failure
Ross Walker
(Wed Jan 14 2009 - 09:45:43 PST)
Rausch, Felix
(Wed Jan 14 2009 - 05:32:04 PST)
[AMBER] Antechamber Connectivity
David Watson
(Mon Jan 26 2009 - 11:59:58 PST)
George Tzotzos
(Mon Jan 26 2009 - 10:23:58 PST)
[AMBER] Antechamber ligand prep
George Tzotzos
(Tue Jan 27 2009 - 08:44:06 PST)
George Tzotzos
(Tue Jan 27 2009 - 07:43:19 PST)
David Watson
(Tue Jan 27 2009 - 07:34:25 PST)
David A. Case
(Tue Jan 27 2009 - 07:33:57 PST)
George Tzotzos
(Tue Jan 27 2009 - 07:24:30 PST)
David A. Case
(Tue Jan 27 2009 - 06:59:47 PST)
George Tzotzos
(Tue Jan 27 2009 - 06:48:11 PST)
[AMBER] atom types
David A. Case
(Tue Jan 27 2009 - 07:13:30 PST)
deepti nayar
(Tue Jan 27 2009 - 01:47:12 PST)
George Tzotzos
(Mon Jan 19 2009 - 10:02:42 PST)
Ross Walker
(Mon Jan 19 2009 - 07:46:10 PST)
George Tzotzos
(Mon Jan 19 2009 - 06:04:09 PST)
[AMBER] Atome Type
David A. Case
(Thu Jan 29 2009 - 05:08:09 PST)
Mahmoud A. A. Ibrahim
(Thu Jan 29 2009 - 02:59:42 PST)
[AMBER] atomic charge
Barbault Florent
(Thu Jan 29 2009 - 00:24:48 PST)
m m
(Thu Jan 29 2009 - 00:08:47 PST)
[AMBER] bad energy??!!
Ross Walker
(Wed Jan 14 2009 - 11:40:24 PST)
momo momo
(Wed Jan 14 2009 - 11:19:20 PST)
[AMBER] Building atom and angle parameters
George Tzotzos
(Tue Jan 27 2009 - 10:24:52 PST)
[AMBER] Can we use AMBER?
Ross Walker
(Thu Jan 08 2009 - 10:47:18 PST)
Casey,Richard
(Thu Jan 08 2009 - 09:25:57 PST)
Casey,Richard
(Thu Jan 08 2009 - 09:16:50 PST)
[AMBER] Can't reproduce RESP charges
FyD
(Tue Jan 13 2009 - 03:52:13 PST)
Sanghwa Han
(Sun Jan 11 2009 - 21:57:15 PST)
[AMBER] charge derivation for ATP molecule using antechamber
David A. Case
(Fri Jan 23 2009 - 08:51:49 PST)
prachi munjal
(Fri Jan 23 2009 - 05:19:27 PST)
[AMBER] charges in topology file
Carlos Simmerling
(Wed Jan 14 2009 - 03:24:52 PST)
vallespardojl.chem.leidenuniv.nl
(Wed Jan 14 2009 - 02:33:35 PST)
[AMBER] Compilation and usage of NAB in parallel ?
Marek Malý
(Fri Jan 30 2009 - 08:01:06 PST)
David A. Case
(Fri Jan 30 2009 - 07:51:31 PST)
Marek Malý
(Fri Jan 30 2009 - 06:59:07 PST)
David A. Case
(Thu Jan 29 2009 - 05:22:08 PST)
Marek Malý
(Wed Jan 28 2009 - 14:25:24 PST)
[AMBER] crystal waters
steinbrt.rci.rutgers.edu
(Mon Jan 12 2009 - 12:37:34 PST)
Carmen Domene
(Mon Jan 12 2009 - 12:32:28 PST)
steinbrt.rci.rutgers.edu
(Mon Jan 12 2009 - 12:16:25 PST)
Carmen Domene
(Mon Jan 12 2009 - 12:04:24 PST)
[AMBER] deduce correlation from covariance matrix
Yi Mao
(Sun Jan 25 2009 - 13:01:05 PST)
[AMBER] Dipole command in ptraj
musa özboyacı
(Wed Jan 14 2009 - 15:15:26 PST)
musa özboyacı
(Wed Jan 14 2009 - 07:41:07 PST)
[AMBER] distance restraint and SHAKE
Thomas Cheatham III
(Tue Jan 27 2009 - 10:16:30 PST)
Michael J Yonkunas
(Tue Jan 27 2009 - 09:39:56 PST)
[AMBER] Divcon or Mopac
Martin Peters
(Wed Jan 14 2009 - 01:01:12 PST)
Cen Gao
(Tue Jan 13 2009 - 15:54:33 PST)
[AMBER] Dr. Ramesh here
David A. Case
(Fri Jan 30 2009 - 08:08:43 PST)
kureeckal ramesh
(Thu Jan 29 2009 - 19:18:33 PST)
kureeckal ramesh
(Thu Jan 29 2009 - 17:41:17 PST)
rpaduri.chem.wayne.edu
(Thu Jan 29 2009 - 09:22:20 PST)
kureeckal ramesh
(Thu Jan 29 2009 - 02:41:10 PST)
[AMBER] Duplicate residues
Bill Ross
(Mon Jan 19 2009 - 11:20:01 PST)
David A. Case
(Mon Jan 19 2009 - 05:16:28 PST)
George Tzotzos
(Mon Jan 19 2009 - 04:54:37 PST)
[AMBER] error in sander (Amber10)
archana sonawani
(Tue Jan 13 2009 - 00:21:09 PST)
[AMBER] Error in xleap
Ross Walker
(Thu Jan 15 2009 - 08:01:20 PST)
archana sonawani
(Wed Jan 14 2009 - 23:39:16 PST)
[AMBER] error on open distatance restraint
xiaonan zhang
(Sat Jan 24 2009 - 19:56:02 PST)
David A. Case
(Fri Jan 23 2009 - 19:18:17 PST)
gmail
(Fri Jan 23 2009 - 18:58:27 PST)
[AMBER] errorin sander---Amber10
David A. Case
(Tue Jan 13 2009 - 05:22:36 PST)
archana sonawani
(Tue Jan 13 2009 - 01:27:43 PST)
[AMBER] errors on REMD
Carlos Simmerling
(Mon Jan 26 2009 - 09:38:39 PST)
z g
(Thu Jan 22 2009 - 17:02:08 PST)
Carlos Simmerling
(Tue Jan 20 2009 - 06:29:07 PST)
z g
(Tue Jan 20 2009 - 05:39:12 PST)
Carlos Simmerling
(Tue Jan 20 2009 - 03:02:06 PST)
z g
(Mon Jan 19 2009 - 18:41:35 PST)
[AMBER] failure to run antechamber with amber 10
Francesco Pietra
(Fri Jan 30 2009 - 00:04:33 PST)
George Tzotzos
(Thu Jan 29 2009 - 14:48:50 PST)
David A. Case
(Thu Jan 29 2009 - 14:45:53 PST)
Francesco Pietra
(Thu Jan 29 2009 - 14:29:18 PST)
[AMBER] force-field for cyclic oligosaccharide using leap
Madhurima Jana
(Sun Jan 11 2009 - 20:21:23 PST)
Madhurima Jana
(Thu Jan 08 2009 - 20:50:18 PST)
[AMBER] four prepin/frcmod files be read simultaneously by leap
David A. Case
(Wed Jan 07 2009 - 10:39:56 PST)
Yi Mao
(Wed Jan 07 2009 - 08:38:52 PST)
rpaduri.chem.wayne.edu
(Wed Jan 07 2009 - 08:05:09 PST)
Yi Mao
(Wed Jan 07 2009 - 06:46:05 PST)
[AMBER] GAFF conjugated ring system dihedrals
David A. Case
(Thu Jan 29 2009 - 10:37:24 PST)
Floris Buelens
(Wed Jan 28 2009 - 04:04:55 PST)
[AMBER] generating top file using antechmaber
Wei Zhang
(Thu Jan 29 2009 - 08:26:22 PST)
sarvin moghaddam
(Thu Jan 29 2009 - 07:24:50 PST)
David A. Case
(Thu Jan 29 2009 - 04:51:56 PST)
sarvin moghaddam
(Wed Jan 28 2009 - 12:33:00 PST)
Wei Zhang
(Wed Jan 28 2009 - 12:23:21 PST)
Wei Zhang
(Wed Jan 28 2009 - 12:12:20 PST)
sarvin moghaddam
(Wed Jan 28 2009 - 11:49:20 PST)
[AMBER] Heat and Equilibrate Hybrid GB solvent?
Carlos Simmerling
(Fri Jan 16 2009 - 13:21:27 PST)
Jason A. Ford-Green
(Fri Jan 16 2009 - 13:14:41 PST)
[AMBER] help
Ross Walker
(Fri Jan 30 2009 - 05:42:33 PST)
momo momo
(Fri Jan 30 2009 - 04:35:22 PST)
[AMBER] how many processors for parallel test
michael bane
(Thu Jan 08 2009 - 05:56:59 PST)
David A. Case
(Thu Jan 08 2009 - 05:44:52 PST)
michael bane
(Thu Jan 08 2009 - 05:31:31 PST)
David A. Case
(Thu Jan 08 2009 - 04:08:06 PST)
michael
(Thu Jan 08 2009 - 03:01:41 PST)
[AMBER] How to calculate cavity volume from MD structures?
Jason A. Ford-Green
(Wed Jan 21 2009 - 07:39:57 PST)
ben rodriguez
(Tue Jan 20 2009 - 14:21:43 PST)
[AMBER] how to set up "Two molecules tied with an Elastic band of 20A in implicit solvent"
Carlos Simmerling
(Tue Jan 20 2009 - 06:33:55 PST)
Jagadeesh, M.N., Ph.D.
(Mon Jan 19 2009 - 01:03:39 PST)
[AMBER] how to use those water models off the list in amber?
GZ Zhang
(Thu Jan 22 2009 - 12:47:02 PST)
David A. Case
(Thu Jan 22 2009 - 05:29:41 PST)
Lauren Wickstrom
(Wed Jan 21 2009 - 15:58:22 PST)
GZ Zhang
(Wed Jan 21 2009 - 13:39:50 PST)
[AMBER] implicit and explicit simulation: salt effect
David A. Case
(Sat Jan 10 2009 - 08:26:45 PST)
David A. Case
(Sat Jan 10 2009 - 08:23:08 PST)
David LeBard
(Fri Jan 09 2009 - 20:23:24 PST)
David Watson
(Fri Jan 09 2009 - 19:49:48 PST)
Catein Catherine
(Fri Jan 09 2009 - 19:03:35 PST)
[AMBER] Installation error - Amber10
David A. Case
(Thu Jan 29 2009 - 10:33:33 PST)
Andreas Svrcek-Seiler
(Thu Jan 29 2009 - 03:52:44 PST)
Ananda Rama Krishnan Selvaraj
(Thu Jan 29 2009 - 03:47:44 PST)
[AMBER] large resp charges for non-natural amino acid
Arturas Ziemys
(Sat Jan 31 2009 - 09:03:44 PST)
Arturas Ziemys
(Sat Jan 31 2009 - 09:03:09 PST)
FyD
(Thu Jan 29 2009 - 13:58:34 PST)
Arturas Ziemys
(Thu Jan 29 2009 - 13:38:12 PST)
FyD
(Thu Jan 29 2009 - 12:57:51 PST)
Arturas Ziemys
(Thu Jan 29 2009 - 07:10:50 PST)
FyD
(Wed Jan 28 2009 - 20:04:11 PST)
Arturas Ziemys
(Tue Jan 27 2009 - 14:40:49 PST)
[AMBER] Ligand Diffusion Studies?
Jason A. Ford-Green
(Thu Jan 15 2009 - 09:42:03 PST)
[AMBER] lone pairs on CYX and MET
Ross Walker
(Thu Jan 08 2009 - 10:17:52 PST)
Beale, John
(Thu Jan 08 2009 - 10:08:42 PST)
[AMBER] mairun
wl2290.columbia.edu
(Thu Jan 08 2009 - 15:11:56 PST)
Ross Walker
(Thu Jan 08 2009 - 14:51:49 PST)
wl2290.columbia.edu
(Thu Jan 08 2009 - 14:33:52 PST)
Ross Walker
(Thu Jan 08 2009 - 10:25:26 PST)
wl2290.columbia.edu
(Thu Jan 08 2009 - 09:30:05 PST)
[AMBER] MD
Ross Walker
(Wed Jan 07 2009 - 16:33:46 PST)
Beale, John
(Wed Jan 07 2009 - 06:40:07 PST)
[AMBER] MD vs scattering
Chih-Ying Lin
(Tue Jan 20 2009 - 13:26:49 PST)
Ross Walker
(Tue Jan 20 2009 - 13:18:26 PST)
Chih-Ying Lin
(Tue Jan 20 2009 - 13:10:47 PST)
[AMBER] MM - PBSA problem
musa özboyacı
(Mon Jan 26 2009 - 08:32:40 PST)
Cenk \(Jenk\) Andac
(Mon Jan 26 2009 - 08:20:25 PST)
musa özboyacı
(Mon Jan 26 2009 - 04:43:33 PST)
Cenk \(Jenk\) Andac
(Mon Jan 26 2009 - 04:14:52 PST)
musa özboyacı
(Mon Jan 26 2009 - 03:15:13 PST)
Cenk \(Jenk\) Andac
(Sun Jan 25 2009 - 12:38:16 PST)
David A. Case
(Sun Jan 25 2009 - 06:26:07 PST)
David A. Case
(Sun Jan 25 2009 - 06:21:33 PST)
musa özboyacı
(Sun Jan 25 2009 - 05:12:05 PST)
Cenk \(Jenk\) Andac
(Fri Jan 23 2009 - 06:34:46 PST)
musa özboyacı
(Fri Jan 23 2009 - 05:14:05 PST)
Niel Henriksen
(Thu Jan 22 2009 - 16:52:09 PST)
Cenk \(Jenk\) Andac
(Thu Jan 22 2009 - 14:00:13 PST)
musa özboyacı
(Thu Jan 22 2009 - 11:52:10 PST)
Ray Luo
(Thu Jan 22 2009 - 09:31:53 PST)
musa özboyacı
(Thu Jan 22 2009 - 09:06:54 PST)
[AMBER] mm-GBSA from implicit
Carlos Simmerling
(Sat Jan 10 2009 - 05:25:10 PST)
Catein Catherine
(Fri Jan 09 2009 - 19:13:28 PST)
[AMBER] molecular mechanic minimisation with amber
Ross Walker
(Wed Jan 14 2009 - 09:56:23 PST)
momo momo
(Wed Jan 14 2009 - 06:58:47 PST)
[AMBER] mpirun
Ross Walker
(Thu Jan 08 2009 - 15:28:12 PST)
[AMBER] multisander error
Justine Condo
(Mon Jan 12 2009 - 15:01:41 PST)
Ross Walker
(Mon Jan 12 2009 - 14:51:48 PST)
Justine Condo
(Mon Jan 12 2009 - 14:39:44 PST)
Justine Condo
(Mon Jan 12 2009 - 14:32:31 PST)
Ross Walker
(Mon Jan 12 2009 - 14:20:06 PST)
David Watson
(Mon Jan 12 2009 - 14:15:26 PST)
Justine Condo
(Mon Jan 12 2009 - 14:03:37 PST)
[AMBER] nab conjgrad min problem
Jeremy Harris
(Mon Jan 19 2009 - 07:00:30 PST)
David A. Case
(Fri Jan 16 2009 - 07:33:01 PST)
Jeremy Harris
(Fri Jan 16 2009 - 07:11:12 PST)
[AMBER] NAB entropy calcualtion
David A. Case
(Fri Jan 09 2009 - 05:13:32 PST)
Andreas Svrcek-Seiler
(Fri Jan 09 2009 - 01:28:48 PST)
chaitanya koppisetty
(Fri Jan 09 2009 - 01:01:13 PST)
[AMBER] Need help with point to plane distance calculation in nab
M. L. Dodson
(Thu Jan 08 2009 - 11:54:15 PST)
IN SUK JOUNG
(Thu Jan 08 2009 - 11:41:09 PST)
M. L. Dodson
(Thu Jan 08 2009 - 11:16:51 PST)
IN SUK JOUNG
(Thu Jan 08 2009 - 11:00:20 PST)
M. L. Dodson
(Thu Jan 08 2009 - 10:39:16 PST)
[AMBER] non-natural amino acids
FyD
(Thu Jan 22 2009 - 15:25:31 PST)
Arturas Ziemys
(Thu Jan 22 2009 - 09:32:11 PST)
[AMBER] Non-planarity of amide atoms after optimization
Sanghwa Han
(Wed Jan 07 2009 - 19:17:18 PST)
[AMBER] NOTICE: File size limits on AMBER reflector
Ross Walker
(Tue Jan 27 2009 - 08:35:50 PST)
[AMBER] NPT md with PME method for a water box
Ross Walker
(Wed Jan 14 2009 - 10:07:13 PST)
Jeffrey
(Wed Jan 14 2009 - 06:41:24 PST)
[AMBER] number-of-EPS-exceeds-MAXESP
Karol Kaszuba
(Sat Jan 17 2009 - 02:41:22 PST)
Karol Kaszuba
(Sun Jan 11 2009 - 23:57:50 PST)
FyD
(Sun Jan 11 2009 - 23:43:48 PST)
Karol Kaszuba
(Sun Jan 11 2009 - 00:01:07 PST)
FyD
(Sat Jan 10 2009 - 23:00:40 PST)
Karol Kaszuba
(Sat Jan 10 2009 - 07:27:08 PST)
FyD
(Sat Jan 10 2009 - 00:26:13 PST)
Karol Kaszuba
(Fri Jan 09 2009 - 13:07:13 PST)
[AMBER] Off topic. Hardware problem
Francesco Pietra
(Sat Jan 10 2009 - 00:26:55 PST)
[AMBER] Parallelepiped periodic box
David A. Case
(Fri Jan 16 2009 - 11:50:32 PST)
Ian Streeter
(Mon Jan 12 2009 - 07:57:55 PST)
[AMBER] PBSA: PB bomb in pb_setgrd()
Ray Luo
(Wed Jan 07 2009 - 10:24:15 PST)
Larry Layne
(Wed Jan 07 2009 - 07:33:57 PST)
[AMBER] PhD position in Computational Structural Biology at Cambridge, UK
Swanand Gore
(Wed Jan 28 2009 - 02:31:16 PST)
[AMBER] PHOSPHOTHREONINE
David A. Case
(Wed Jan 07 2009 - 11:29:35 PST)
Khaled Barakat
(Wed Jan 07 2009 - 11:11:43 PST)
[AMBER] pmemd | Compilation problem with ifort and mvapich environment
Ross Walker
(Wed Jan 14 2009 - 09:53:20 PST)
fohm fohm
(Wed Jan 14 2009 - 09:23:50 PST)
[AMBER] Postdoc Position Available at SDSC/UCSD
Ross Walker
(Wed Jan 14 2009 - 12:35:52 PST)
[AMBER] principal component vector onto C-alpha
S.Sundar Raman
(Tue Jan 13 2009 - 14:46:20 PST)
Carra, Claudio (JSC-SK)[USRA]
(Tue Jan 13 2009 - 12:52:31 PST)
[AMBER] problem building AmberTools/sleap on AIX
Shan-ho Tsai
(Wed Jan 21 2009 - 13:53:00 PST)
Wei Zhang
(Fri Jan 16 2009 - 13:19:42 PST)
Shan-ho Tsai
(Fri Jan 16 2009 - 12:58:53 PST)
Shan-ho Tsai
(Mon Jan 12 2009 - 07:31:51 PST)
Wei Zhang
(Fri Jan 09 2009 - 14:28:08 PST)
Shan-ho Tsai
(Fri Jan 09 2009 - 13:49:17 PST)
Bill Ross
(Fri Jan 09 2009 - 09:45:55 PST)
Shan-ho Tsai
(Fri Jan 09 2009 - 08:46:59 PST)
Wei Zhang
(Fri Jan 09 2009 - 08:37:43 PST)
Shan-ho Tsai
(Fri Jan 09 2009 - 08:27:56 PST)
[AMBER] Problem in pb simulation, PB_Bomb
Waqas Nasir
(Thu Jan 29 2009 - 01:08:22 PST)
[AMBER] Problem in watercap simulation, PB_Bomb
Ray Luo
(Thu Jan 29 2009 - 09:45:33 PST)
Waqas Nasir
(Thu Jan 29 2009 - 06:21:20 PST)
[AMBER] Problem with entropy calculation of bigger system using NMODE and NAB.
David A. Case
(Sat Jan 24 2009 - 06:37:31 PST)
Marek Malý
(Wed Jan 21 2009 - 14:48:58 PST)
David A. Case
(Wed Jan 21 2009 - 06:52:33 PST)
Marek Malý
(Tue Jan 20 2009 - 18:48:03 PST)
David A. Case
(Tue Jan 20 2009 - 12:53:48 PST)
Niel Henriksen
(Tue Jan 20 2009 - 12:49:38 PST)
Marek Malý
(Tue Jan 20 2009 - 10:24:55 PST)
[AMBER] prot-DNA simulation
Thomas Cheatham III
(Wed Jan 21 2009 - 13:55:52 PST)
deepti nayar
(Wed Jan 21 2009 - 03:16:09 PST)
[AMBER] ptraj, CHARMM PSF and CMAP
Ross Walker
(Wed Jan 14 2009 - 08:46:17 PST)
Hannes Loeffler
(Wed Jan 14 2009 - 01:45:07 PST)
[AMBER] PTRAJ: solvent accessible surface area
Carlos Simmerling
(Wed Jan 14 2009 - 07:00:59 PST)
steinbrt.rci.rutgers.edu
(Wed Jan 14 2009 - 06:59:19 PST)
Catein Catherine
(Tue Jan 13 2009 - 23:32:15 PST)
[AMBER] Question on heating for homology based model.
drugdesign
(Sat Jan 31 2009 - 10:43:06 PST)
[AMBER] reaction coordinates
Catein Catherine
(Wed Jan 14 2009 - 21:25:31 PST)
David A. Case
(Wed Jan 14 2009 - 05:00:59 PST)
Rausch, Felix
(Wed Jan 14 2009 - 03:54:57 PST)
[AMBER] reg . parallel run
Ross Walker
(Thu Jan 22 2009 - 07:52:55 PST)
balaji nagarajan
(Wed Jan 21 2009 - 21:34:03 PST)
[AMBER] reg.error in parallel run
Ross Walker
(Fri Jan 23 2009 - 07:52:20 PST)
balaji nagarajan
(Fri Jan 23 2009 - 02:05:21 PST)
[AMBER] reg.parallel run error
Ross Walker
(Thu Jan 22 2009 - 12:06:33 PST)
balaji nagarajan
(Thu Jan 22 2009 - 10:41:25 PST)
[AMBER] reg.parallel.run error
Ross Walker
(Fri Jan 23 2009 - 22:05:50 PST)
balaji nagarajan
(Fri Jan 23 2009 - 17:59:21 PST)
[AMBER] reg.parallel.run.error
balaji nagarajan
(Sat Jan 24 2009 - 07:09:49 PST)
[AMBER] reg.Targeted molecular dynamics
Carlos Simmerling
(Wed Jan 28 2009 - 10:01:43 PST)
balaji nagarajan
(Tue Jan 27 2009 - 05:57:01 PST)
balaji nagarajan
(Tue Jan 27 2009 - 05:56:54 PST)
[AMBER] reg: targeted molecular dynamics
Carlos Simmerling
(Tue Jan 27 2009 - 05:04:57 PST)
balaji nagarajan
(Tue Jan 27 2009 - 05:02:03 PST)
[AMBER] Release of the R.E.D.-III.1 tools
FyD
(Mon Jan 12 2009 - 03:59:14 PST)
[AMBER] REM_hybrid test fails on AIX
Shan-ho Tsai
(Thu Jan 22 2009 - 12:28:04 PST)
[AMBER] REMD fixed atoms
Maxime Louet
(Fri Jan 30 2009 - 09:26:08 PST)
[AMBER] RESP charges for Fe in heme
Carina Backtorp
(Mon Jan 19 2009 - 05:48:11 PST)
[AMBER] restraining atoms
Carlos Simmerling
(Thu Jan 22 2009 - 06:55:35 PST)
neville forlemu
(Thu Jan 22 2009 - 06:53:48 PST)
[AMBER] restraint of REMD
Carlos Simmerling
(Fri Jan 16 2009 - 03:57:29 PST)
z g
(Thu Jan 15 2009 - 18:51:46 PST)
[AMBER] Rosetta Academic Training Workshop
Nir London
(Tue Jan 27 2009 - 05:07:24 PST)
[AMBER] sander not working
Carlos Simmerling
(Fri Jan 16 2009 - 07:01:34 PST)
David A. Case
(Fri Jan 16 2009 - 06:58:50 PST)
archana sonawani
(Thu Jan 15 2009 - 21:52:48 PST)
[AMBER] solvent mixture
Gustavo Seabra
(Sat Jan 24 2009 - 18:44:31 PST)
iccy liu
(Tue Jan 20 2009 - 14:08:34 PST)
[AMBER] TEST Message - please ignore.
Ross Walker
(Tue Jan 06 2009 - 17:00:39 PST)
[AMBER] Test run on Solaris 10 X 86
David A. Case
(Sat Jan 31 2009 - 18:49:22 PST)
Manikandan Chandrasekaran
(Sat Jan 31 2009 - 10:39:14 PST)
[AMBER] thermo, entropy by quasiharmonic method
David A. Case
(Fri Jan 30 2009 - 15:40:38 PST)
Carra, Claudio (JSC-SK)[USRA]
(Fri Jan 30 2009 - 13:35:37 PST)
[AMBER] thioglycoside
Lachele Foley (Lists)
(Mon Jan 26 2009 - 07:36:26 PST)
FyD
(Mon Jan 26 2009 - 07:07:37 PST)
Alexander Schierholt
(Mon Jan 26 2009 - 06:46:28 PST)
[AMBER] to remove AMBER list
Ross Walker
(Sat Jan 17 2009 - 13:32:19 PST)
Furia Gargano
(Sat Jan 17 2009 - 10:02:26 PST)
[AMBER] To stop the AMBER's list
Furia Gargano
(Sat Jan 17 2009 - 09:59:48 PST)
[AMBER] topology file for GLY with amino and carboxyl group?
FyD
(Tue Jan 27 2009 - 12:02:14 PST)
Jose Borreguero
(Tue Jan 27 2009 - 10:57:45 PST)
[AMBER] Use of Amber in distributed calculations
M. L. Dodson
(Sat Jan 17 2009 - 06:01:36 PST)
M. L. Dodson
(Sat Jan 17 2009 - 05:48:42 PST)
drugdesign
(Fri Jan 16 2009 - 23:33:55 PST)
[AMBER] Using a restart file
Ross Walker
(Thu Jan 15 2009 - 08:52:44 PST)
Carlos Simmerling
(Thu Jan 15 2009 - 08:45:27 PST)
Simone Swift
(Thu Jan 15 2009 - 08:40:38 PST)
[AMBER] using binary trajectories from NAMD in PTRAJ
karthik s
(Mon Jan 26 2009 - 22:49:13 PST)
Wei Huang
(Mon Jan 26 2009 - 06:41:22 PST)
karthik s
(Sun Jan 25 2009 - 23:11:29 PST)
[AMBER] Using GAFF with a covalently bound ligand or label
FyD
(Fri Jan 16 2009 - 01:13:43 PST)
Markus Kaukonen
(Thu Jan 15 2009 - 22:31:53 PST)
David A. Case
(Wed Jan 07 2009 - 18:42:27 PST)
Sale, Kenneth L
(Wed Jan 07 2009 - 17:30:10 PST)
[AMBER] Very weird topology problem
Peter Gannett
(Sat Jan 24 2009 - 15:17:26 PST)
ranqi zhu
(Sat Jan 24 2009 - 13:14:24 PST)
[AMBER] Watercap... some querries
Robert Duke
(Wed Jan 28 2009 - 10:46:02 PST)
Waqas Nasir
(Wed Jan 28 2009 - 07:10:48 PST)
David A. Case
(Wed Jan 28 2009 - 07:01:46 PST)
Waqas Nasir
(Wed Jan 28 2009 - 06:54:00 PST)
[AMBER] Writing out trajectory in NAB
David A. Case
(Mon Jan 12 2009 - 09:22:58 PST)
xxxzzzyyy xxxzzzyyy
(Mon Jan 12 2009 - 08:43:33 PST)
[AMBER] Xleap - solvatebox - counterions
amirhossein taghavi
(Sat Jan 31 2009 - 09:34:10 PST)
Bill Ross
(Fri Jan 30 2009 - 10:40:07 PST)
David A. Case
(Fri Jan 30 2009 - 08:04:23 PST)
Arnaud
(Fri Jan 30 2009 - 02:44:58 PST)
[AMBER] xleap problem
David A. Case
(Sun Jan 25 2009 - 15:30:47 PST)
oguz gurbulak
(Sun Jan 25 2009 - 03:49:28 PST)
oguz gurbulak
(Sun Jan 25 2009 - 08:34:39 PST)
oguz gurbulak
(Sun Jan 25 2009 - 08:27:48 PST)
oguz gurbulak
(Sun Jan 25 2009 - 08:02:50 PST)
David A. Case
(Sun Jan 25 2009 - 05:57:41 PST)
oguz gurbulak
(Sun Jan 25 2009 - 03:56:12 PST)
[AMBER] xmgrace and plotting time evolution of a defined variable
Mark Williamson
(Wed Jan 14 2009 - 16:38:17 PST)
Naser Alijabbari
(Wed Jan 14 2009 - 16:20:31 PST)
amber force filed for RNA
Ross Walker
(Wed Jan 07 2009 - 08:49:41 PST)
AMBER: a question about ff03ua
FyD
(Fri Jan 02 2009 - 12:20:37 PST)
David A. Case
(Fri Jan 02 2009 - 08:35:15 PST)
oguz gurbulak
(Fri Jan 02 2009 - 07:30:46 PST)
AMBER: apparent error in closest function in ptraj 10
Roman Osman
(Fri Jan 02 2009 - 09:37:09 PST)
D.J. Cole
(Fri Jan 02 2009 - 08:06:01 PST)
Roman Osman
(Fri Jan 02 2009 - 07:54:48 PST)
AMBER: bug of the mm_pbsa module in ambertools 1.2
Scott Brozell
(Tue Jan 06 2009 - 10:59:15 PST)
Ye Mei
(Mon Jan 05 2009 - 07:28:02 PST)
AMBER: CHCl3 solvent box
WJ Ding
(Mon Jan 05 2009 - 13:21:32 PST)
David A. Case
(Mon Jan 05 2009 - 05:48:44 PST)
WJ Ding
(Sun Jan 04 2009 - 14:24:48 PST)
AMBER: Dielectric constant
musa özboyacı
(Sat Jan 03 2009 - 10:54:06 PST)
AMBER: energy jumps during molecule minimization
David A. Case
(Fri Jan 02 2009 - 04:48:23 PST)
Paul Ledbetter
(Thu Jan 01 2009 - 19:33:30 PST)
AMBER: error in amber 10
David A. Case
(Tue Jan 06 2009 - 04:28:54 PST)
David A. Case
(Tue Jan 06 2009 - 04:18:23 PST)
archana sonawani
(Mon Jan 05 2009 - 23:19:03 PST)
AMBER: IMPORTANT Information regarding AMBER Mailing List - please read.
Ross Walker
(Tue Jan 06 2009 - 12:40:00 PST)
AMBER: IMPORTANT INFORMATION: Notice regarding transition of AMBER mailing list to new address.
Ross Walker
(Sat Jan 03 2009 - 14:12:19 PST)
AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64)
Scott Brozell
(Tue Jan 06 2009 - 11:23:29 PST)
AMBER: install amber10
Scott Brozell
(Tue Jan 06 2009 - 11:33:21 PST)
wl2290.columbia.edu
(Tue Jan 06 2009 - 09:23:01 PST)
AMBER: ligand parameter
Yu Chen
(Sun Jan 11 2009 - 17:25:41 PST)
Bo Baker
(Sun Jan 11 2009 - 16:52:19 PST)
David Watson
(Sun Jan 11 2009 - 16:39:02 PST)
Bo Baker
(Sun Jan 11 2009 - 16:20:08 PST)
Ross Walker
(Wed Jan 07 2009 - 20:10:20 PST)
Bo Baker
(Wed Jan 07 2009 - 18:18:02 PST)
David A. Case
(Wed Jan 07 2009 - 05:08:27 PST)
Bo Baker
(Tue Jan 06 2009 - 21:05:00 PST)
Ross Walker
(Tue Jan 06 2009 - 20:25:20 PST)
Bo Baker
(Tue Jan 06 2009 - 19:59:19 PST)
Ross Walker
(Mon Jan 05 2009 - 21:48:13 PST)
Bo Baker
(Mon Jan 05 2009 - 14:05:18 PST)
AMBER: mail list
M. L. Dodson
(Wed Jan 07 2009 - 08:04:02 PST)
James W. Caldwell
(Tue Jan 06 2009 - 17:24:12 PST)
Ross Walker
(Tue Jan 06 2009 - 15:47:08 PST)
Mark M Huntress
(Tue Jan 06 2009 - 15:06:57 PST)
AMBER: problem with ptraj image command in Amber 10?
Carlos Simmerling
(Tue Jan 06 2009 - 09:37:51 PST)
Ryan Pavlovicz
(Tue Jan 06 2009 - 09:28:27 PST)
AMBER: questions about equilibram
wei zhang
(Tue Jan 13 2009 - 04:58:51 PST)
David A. Case
(Wed Jan 07 2009 - 04:54:10 PST)
wei zhang
(Tue Jan 06 2009 - 03:18:47 PST)
AMBER: reg sander crashing on more than 32 cores over IB
David A. Case
(Mon Jan 05 2009 - 04:47:01 PST)
Amit Bajaj
(Sun Jan 04 2009 - 22:33:15 PST)
AMBER: RMS plot
Carlos Simmerling
(Tue Jan 06 2009 - 11:57:50 PST)
Duggan, Brendan M.
(Tue Jan 06 2009 - 11:54:04 PST)
Carlos Simmerling
(Fri Jan 02 2009 - 06:08:44 PST)
AMBER: SMD-related questions
Gustavo Seabra
(Fri Jan 02 2009 - 05:21:53 PST)
AMBER: xleap problem
Bala subramanian
(Wed Jan 07 2009 - 06:54:44 PST)
David A. Case
(Wed Jan 07 2009 - 05:43:16 PST)
Bala subramanian
(Wed Jan 07 2009 - 05:34:43 PST)
David A. Case
(Wed Jan 07 2009 - 05:06:19 PST)
Bala subramanian
(Wed Jan 07 2009 - 02:53:24 PST)
Ross Walker
(Tue Jan 06 2009 - 19:58:26 PST)
Bala subramanian
(Tue Jan 06 2009 - 11:43:00 PST)
Carlos Simmerling
(Tue Jan 06 2009 - 11:05:31 PST)
Bala subramanian
(Tue Jan 06 2009 - 10:57:53 PST)
errors on remd
Ross Walker
(Fri Jan 23 2009 - 08:38:06 PST)
nmode error: bad nonbon (amber 10)
David A. Case
(Wed Jan 14 2009 - 05:13:18 PST)
Jeremy Harris
(Tue Jan 13 2009 - 13:58:36 PST)
David A. Case
(Tue Jan 06 2009 - 06:32:48 PST)
Jeremy Harris
(Tue Jan 06 2009 - 05:37:21 PST)
same result
zgong.hust
(Thu Jan 08 2009 - 00:49:29 PST)
Ross Walker
(Wed Jan 07 2009 - 08:59:39 PST)
Tutorial 5
Ross Walker
(Fri Jan 30 2009 - 17:32:03 PST)
George Tzotzos
(Fri Jan 16 2009 - 12:31:11 PST)
Ross Walker
(Fri Jan 16 2009 - 09:10:51 PST)
xleap problem
M. L. Dodson
(Thu Jan 29 2009 - 08:22:22 PST)
oguz gurbulak
(Thu Jan 29 2009 - 07:53:30 PST)
David A. Case
(Tue Jan 27 2009 - 07:18:53 PST)
oguz gurbulak
(Mon Jan 26 2009 - 13:40:22 PST)
M. L. Dodson
(Mon Jan 26 2009 - 12:47:26 PST)
oguz gurbulak
(Mon Jan 26 2009 - 11:48:11 PST)
oguz gurbulak
(Sun Jan 25 2009 - 08:08:26 PST)
Last message date
:
Sun Feb 01 2009 - 01:22:26 PST
Archived on
: Fri Nov 22 2024 - 05:53:44 PST
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