hi:
with amber10/ambertools 1.2 i was unable to run antechamber, as
indicated below (i can't remember if this is the 1st time i am dealing
with antechamber in ambertools 1.2)
$AMBERHOME/exe/antechamber -i myfile.pdb -fi pdb -o myfile.prepin -fo
prepi -c bcc -s 2
returned the error:
Error: cannot run "/usr/local/amber10/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac" in
judgebondtype() of antechamber.c properly, exit
Running: /usr/local/amber10/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac
===
with amber 9 - installed in the same machine - the above procedure
(without retyping) could be carried out correctly.
thanks for detecting the origin of the problem
francesco pietra
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Received on Fri Jan 30 2009 - 01:40:00 PST
