Thank you for the guidance. I generated parameters (top & crd) using LEaP in
AMBER. Thanks once again. Good day
On Mon, Jan 26, 2009 at 8:11 PM, Wei Huang <whuang.cct.lsu.edu> wrote:
> Hi Karthik,
>
> Yes, it is supported by ptraj to analyze dcd trajectory from NAMD. But you
> need a psf file in CHARMM format (notice: this is not the default psf file
> in NAMD) or an AMBER topology file to load up the trajectory.
>
> Best,
> Wei
>
> -----Original Message-----
> From: amber-bounces.ambermd.org [mailto:amber-bounces.ambermd.org] On
> Behalf
> Of karthik s
> Sent: Monday, January 26, 2009 1:11 AM
> To: amber.ambermd.org
> Subject: [AMBER] using binary trajectories from NAMD in PTRAJ
>
> Dear Users,
> I simulated by protein system in NAMD. I wish to analyse the
> datas in PTRAJ module of AMBER. Is the format of binary trajectories (.dcd)
> from NAMD supported in AMBER. kindly help me in this regard.
> Thanks in advance.
>
> --
> karthik
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karthik
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Received on Fri Jan 30 2009 - 01:09:24 PST
