[AMBER] Xleap - solvatebox - counterions

From: Arnaud <arnaud.lcc-toulouse.fr>
Date: Fri, 30 Jan 2009 11:44:58 +0100

Dear users,

I use xleap on amber10 package and I am quite surprise by some results.
If I solvate (solvatebox test TIP3PBOX 10) my molecular system previously
neutralized with Na+ counterions (addions test Na+ 0) the number of water
residues added is 5824.
If I solvate the same molecular system previously neutralized with K+, the
number of water residues increase to 7846.

With xleap on amber9 package, these values are different respectively 4674
and 5183.

Why all these differences, where is the mistake ?

Thanks a lot

Philippe

___________________________________________________________________
CNRS / Laboratoire de Chimie de Coordination



-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Feb 01 2009 - 01:07:20 PST
Custom Search