Dear Arturas,
> Does anyone has link or reference toward parameters of
> alpha-carboxyl-glutamic amino acid and amino acid with naphtyl residue ?
I might be wrong, but my feeling is that you will have to generate
your own FF libraries with your own charge values... If you download
the R.E.D.-III.1 tools .
http://q4md-forcefieldtools.org/RED/, you
will find within the distribution a HowTo/Tutorial for the central &
N-terminal fragments of new amino acids with examples of R.E.D. input
files. This allows users generating quick results when one first gets
the R.E.D.-III.1 tools distribution. I hope this HowTo/Tutorial will
be complementary to the other tutorials at
http://q4md-forcefieldtools.org/Tutorial/.
regards, Francois
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jan 23 2009 - 01:25:59 PST
