Amber Archive Jun 2005: by date

Tuesday, 31 May 2005
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Shulin Zhuang
- Re: AMBER: density problem Shulin Zhuang
- Re: AMBER: Is the MD simulation normal JunJun Liu
Wednesday, 1 June 2005
- AMBER: problem in minimization Ananda Rama Krishnan Selvaraj
- AMBER: Saturated DNA bases L.C. Heady
- RE: AMBER: Error on restrained MD equilibration (AMBER 7) L Jin
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) L Jin
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Petr Kulhanek
- AMBER: eigenvalues in vector of ptraj Hwankyu Lee
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Guanglei Cui
- AMBER: stripwater Lukasz Bielecki
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) L Jin
- RE: AMBER: density problem Ross Walker
- RE: RE: AMBER: Antechamber RESP failed for large organic molecule Junmei Wang
- RE: AMBER: problem in minimization Ross Walker
- Re: AMBER: mm/pbsa error Eric Hu
- Re: RE: RE: AMBER: Antechamber RESP failed for large organic molecule junwang
- AMBER: Build of AMBER for YDL ? Gert Kiss
- RE: AMBER: Build of AMBER for YDL ? Ross Walker
- Re: AMBER: MM-PBSA calculation Scott Pendley
- AMBER: gaff.dat typo Brent Krueger
- AMBER: amber question about leap du yongchun
- AMBER: amber8 installation problems Zhang Bing
- AMBER: amber8 installation problems Zhang Bing
Thursday, 2 June 2005
- AMBER: question whem using leap du yongchun
- Re: RE: AMBER: problem in minimization Ananda Rama Krishnan Selvaraj
- RE:AMBER: density problem cristian obiol
- AMBER: Argon Box Biswaroop Mukherjee
- AMBER: center-of-mass distance restraints JAVIER PEREZ
- Re: AMBER: question whem using leap Carlos Simmerling
- AMBER: Simon Whitehead
- AMBER: Protein ions? Anthony Cruz
- Re: AMBER: Protein ions? Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini)
- Re: AMBER: gaff.dat typo David A. Case
- Re: AMBER: amber question about leap David A. Case
- Re: AMBER: amber8 installation problems David A. Case
- Re: AMBER: Protein ions? David A. Case
- AMBER: How does Amber8 implemnet ntf=4? Li Su
- Re: AMBER: How does Amber8 implemnet ntf=4? David A. Case
- Re: AMBER: How does Amber8 implemnet ntf=4? Carlos Simmerling
- Re: AMBER: Protein ions? Anthony Cruz
- Re: AMBER: DNA base-flipping: TI vs PMF Peter Varnai
- AMBER: checkoverlap Gustavo Pierdominici Sottile
- AMBER: pressure output Germán Sciaini
- AMBER: advice needed for minimization and dynamic protocol chaiann ng
- AMBER: New problem of parallel sander Zhang Bing
Friday, 3 June 2005
- AMBER: TI in Amber8 建平胡
- Re: AMBER: TI in Amber8 David A. Case
- Re: AMBER: pressure output David A. Case
- Re: AMBER: New problem of parallel sander David A. Case
- RE: AMBER: Ross Walker
- RE: AMBER: New problem of parallel sander Ross Walker
- AMBER: Nmode with residues excluded Martin Sippel
- AMBER: Nmode calculations Martin Sippel
Saturday, 4 June 2005
- AMBER: radius parameter for Mg2+ in mm_pbsa calculation Ye Mei
- Re: AMBER: radius parameter for Mg2+ in mm_pbsa calculation Guanglei Cui
Sunday, 5 June 2005
- AMBER: SHAKE in md with partial solvation Ye Mei
- Re: AMBER: SHAKE in md with partial solvation Ye Mei
- AMBER: fail of minimization in sander wendy
- Re: AMBER: fail of minimization in sander Bill Ross
- Re: AMBER: fail of minimization in sander wendy
Monday, 6 June 2005
- Re: AMBER: radius parameter for Mg2+ in mm_pbsa calculation Thomas Steinbrecher
- AMBER: nmode with ibelly Martin Sippel
- Re: AMBER: fail of minimization in sander wendy
- Re: AMBER: SHAKE in md with partial solvation Germán Sciaini
- AMBER: Solvate question? Anthony Cruz
- AMBER: Re: Re: AMBER: SHAKE in md with partial solvation Ye Mei
- Re: AMBER: fail of minimization in sander Carlos Simmerling
- Re: AMBER: Solvate question? Carlos Simmerling
- AMBER: Compile question?? Anthony Cruz
- Re: AMBER: Compile question?? Robert Duke
- Re: AMBER: Compile question?? Anthony Cruz
- AMBER: Error: vlimit exceeded for step Hwankyu Lee
- Re: AMBER: Compile question?? Robert Duke
- Re: AMBER: Compile question?? Robert Duke
- Re: AMBER: fail of minimization in sander Bill Ross
- Re: AMBER: fail of minimization in sander wendy
- Re: AMBER: Solvate question? Anthony Cruz
- AMBER: Solvents Anthony Cruz
- Re: AMBER: fail of minimization in sander Carlos Simmerling
- Re: AMBER: fail of minimization in sander wendy
- Re: AMBER: Solvate question? Carlos Simmerling
- AMBER: GB/SA/LD parallel sander Lwin, ThuZar
- RE: AMBER: SHAKE in md with partial solvation Ross Walker
- RE: AMBER: Error: vlimit exceeded for step Ross Walker
- RE: AMBER: fail of minimization in sander Ross Walker
- Re: AMBER: fail of minimization in sander Bill Ross
- Re: AMBER: nmode with ibelly David A. Case
- AMBER: eelnb Stern, Julie
- AMBER: Protein dynamics. Laurence Lavelle
- AMBER: segmentation fault in sander Kenley Barrett
- Re: AMBER: segmentation fault in sander Bill Ross
- Re: AMBER: Protein dynamics. David A. Case
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee
- RE: AMBER: Error: vlimit exceeded for step Ross Walker
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee
- Re: AMBER: Error: vlimit exceeded for step Bill Ross
- RE: AMBER: Error: vlimit exceeded for step Ross Walker
Tuesday, 7 June 2005
- Re: AMBER: nmode with ibelly Martin Sippel
- AMBER: Gibbs perturb DNA strands separate ivan.mmb.pcb.ub.es
- Re: AMBER: fail of minimization in sander Andy Purkiss
- Re: AMBER: Solvate question? Anthony Cruz
- AMBER: nucgen problem cbala.igib.res.in
- Re: RE: AMBER: SHAKE in md with partial solvation Ye Mei
- Re: AMBER: nucgen problem David A. Case
- Re: AMBER: nmode with ibelly David A. Case
- Re: AMBER: segmentation fault in sander Kenley Barrett
- AMBER: Question about tutorial-9 Varsha Goyal
- Re: AMBER: segmentation fault in sander Bill Ross
- Re: AMBER: nucgen problem Bill Ross
- AMBER: AMBER frcmod+off input vs. prep input K. Yarem
- Re: AMBER: quadrupole in resp David A. Case
- Re: AMBER: AMBER frcmod+off input vs. prep input Bill Ross
- Re: AMBER: nucgen problem cbala.igib.res.in
- Re: AMBER: nucgen problem Bill Ross
- Re: AMBER: nucgen problem Carlos Simmerling
- Re: AMBER: nucgen problem David A. Case
- AMBER: TI calculation using sander Latifa Douali
- Re: AMBER: TI calculation using sander David A. Case
- AMBER: How to run amber more efficiently? alice
- AMBER: Protein dynamics. Laurence Lavelle
Wednesday, 8 June 2005
- RE:AMBER: density problem cristian obiol
- AMBER: Sander is changing directories Andreas Kerzmann
- AMBER: Sander is changing directories Andreas Kerzmann
- AMBER: total energy leaps cristian obiol
- Re: AMBER: total energy leaps Carlos Simmerling
- AMBER: TI tutorial in Amber 8 huhu
- Re: AMBER: Protein dynamics. Yong Duan
- AMBER: (no subject) Mohammed Mayeed
- Re: AMBER: nmode with ibelly Martin Sippel
- AMBER: Protein-surface interaction Mohammed Mayeed
- AMBER: GB/SA/LD parallel sander Lwin, ThuZar
- Re: AMBER: GB/SA/LD parallel sander Carlos Simmerling
- AMBER: Compile Problems of Parallel Amber8 on Mac G5 Suxin Zheng
- Re: AMBER: TI tutorial in Amber 8 David A. Case
- Re: AMBER: nmode with ibelly David A. Case
- AMBER: precision switch from 64 to 32 bit (double from single precision) Cordova, Luis E.
Thursday, 9 June 2005
- Re: AMBER: precision switch from 64 to 32 bit (double from single precision) Robert Duke
- AMBER: normal mode mm/pbsa interupted Eric Hu
- AMBER: setting up restraint with ntr option Lwin, ThuZar
- AMBER: transfer data from Linux to windows gtg549i.mail.gatech.edu
- Re: AMBER: transfer data from Linux to windows Lihua Wang
- Re: AMBER: transfer data from Linux to windows Carlos Simmerling
- Re: AMBER: transfer data from Linux to windows Thomas Patko
- Re: AMBER: transfer data from Linux to windows Fajar Rakhman Wibowo
- Re: AMBER: setting up restraint with ntr option Viktor Hornak
- AMBER: atom type for -CH=CH- Qizhi Cui
Friday, 10 June 2005
- AMBER: substitute missing residues? Wai Keat Yam
- AMBER: Vibrational spectrum? milion.c-box.cz
- AMBER: SOURCE3 in gaff.dat Stern, Julie
- Re: AMBER: Vibrational spectrum? [SOLUTION] Mark Williamson
- Re: AMBER: atom type for -CH=CH- Guanglei Cui
- AMBER: Make Distance restraints for non-standard residues gtg549i.mail.gatech.edu
- AMBER: vdw for terminal phosphate Rhoad, Jonathan S.
- Re: AMBER: vdw for terminal phosphate Bill Ross
- Re: AMBER: Make Distance restraints for non-standard residues David A. Case
- Re: AMBER: Make Distance restraints for non-standard residues gtg549i.mail.gatech.edu
- AMBER: Can constant pH be used for minimization? Kenley Barrett
- AMBER: inpcrd file Douali, Latifa
Saturday, 11 June 2005
- Re: AMBER: Can constant pH be used for minimization? David A. Case
Sunday, 12 June 2005
- AMBER: Installation problem Sukjoon Yoon
- Re: AMBER: Installation problem Chris Harrison
- AMBER: no corrected reaction field energy in *.out files after running mm_pbsa haixiao jin
- RE: AMBER: Installation problem Sukjoon Yoon
- AMBER: Installation problem Sukjoon Yoon
- AMBER: how to pull out frames Vijay Manickam Achari
- AMBER: leap issues on a powerbook justin litchfield
Monday, 13 June 2005
- Re: AMBER: how to pull out frames Husni Fattayer
- AMBER: Need help in charge fitting through RESP S.Sundar Raman
- Re: AMBER: Need help in charge fitting through RESP Shulin Zhuang
- Re: AMBER: Need help in charge fitting through RESP FyD
- Re: AMBER: Need help in charge fitting through RESP Nadine Homeyer
- RE: AMBER: vdw for terminal phosphate Rhoad, Jonathan S.
- Re: AMBER: Need help in charge fitting through RESP junwang
- Re: AMBER: Installation problem. . Don.Bashford.stjude.org
- AMBER: Announcing the LMOD website Istvan Kolossvary
- AMBER: GBSA and thermodynamic ensemble Osmar Norberto de Souza
- AMBER: atom type question opitz.che.udel.edu
- Re: AMBER: GBSA and thermodynamic ensemble Julien Michel
- Re: AMBER: atom type question David A. Case
- Re: AMBER: GBSA and thermodynamic ensemble David A. Case
- RE: AMBER: vdw for terminal phosphate Bill Ross
- Re: AMBER: atom type question opitz.che.udel.edu
- AMBER: why the dipeptide always moving out the virtual box Li Su
- Re: AMBER: why the dipeptide always moving out the virtual box David A. Case
- AMBER: Restrained-MD Ananda Rama Krishnan Selvaraj
- Re: AMBER: Restrained-MD David A. Case
- Re: AMBER: Installation problem Chris Harrison
- Re: AMBER: how to pull out frames Vijay Manickam Achari
Tuesday, 14 June 2005
- AMBER: compiler Zhang Bing
- AMBER: nmropt =1 AND ntr=1 in pmemd Christoph Brockmann
- AMBER: creating pdb file.... Vijay Manickam Achari
- Re: AMBER: creating pdb file.... Angelo Pugliese
- AMBER: compiler Zhang Bing
- Re: AMBER: nmropt =1 AND ntr=1 in pmemd Robert Duke
- AMBER: time and lifetime in hbond analysis (ptraj) Giulio Rastelli
- Re: AMBER: time and lifetime in hbond analysis (ptraj) Angelo Pugliese
- AMBER: Request for g98 (IOP...) Paramasivam Manikandan
- Re: AMBER: Request for g98 (IOP...) FyD
- Re: AMBER: Request for g98 (IOP...) Oliver Hucke
- AMBER: sp2 carbon atom parametrization Gustavo Pierdominici Sottile
- AMBER: Extended bonds-MD Ananda Rama Krishnan Selvaraj
- RE: AMBER: Extended bonds-MD Ross Walker
- RE: AMBER: compiler Ross Walker
- Re: AMBER: compiler David LeBard
- RE: AMBER: creating pdb file.... Ross Walker
- AMBER: Free Energy Calculation torsion missing mrbroad.ilstu.edu
- Re: AMBER: compiler David A. Case
- Re: AMBER: why the dipeptide always moving out the virtual box Li Su
- Re: AMBER: why the dipeptide always moving out the virtual box David A. Case
- Re: AMBER: Can constant pH be used for minimization? John Mongan
- AMBER: puzzling gaff parameter Oliver Hucke
- AMBER: Thanks Zhang Bing
- AMBER: solutions of amber installation problems Zhang Bing
- RE: AMBER: solutions of amber installation problems Ross Walker
- AMBER: Installation problem. . Sukjoon Yoon
Wednesday, 15 June 2005
- AMBER: Extended bonds-MD Ananda Rama Krishnan Selvaraj
- Re: AMBER: fail of minimization in sander wendy
- AMBER: bad atom type: H alice
- Re: AMBER: fail of minimization in sander Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini)
- Re: AMBER: Extended bonds-MD Carlos Simmerling
- Re: AMBER: fail of minimization in sander Carlos Simmerling
- Re: AMBER: Installation problem. . Andreas Svrcek-Seiler
- Re: AMBER: Extended bonds-MD Ananda Rama Krishnan Selvaraj
- Re: AMBER: bad atom type: H David A. Case
- Re: AMBER: atom type question David A. Case
- AMBER: Question about "quasih" Yen-Ting Lai
- RE: AMBER: Installation problem. . Ross Walker
- Re: AMBER: Question about "quasih" David A. Case
- Re: AMBER: Question about "quasih" Yen-Ting Lai
- Re: AMBER: Question about "quasih" David A. Case
- AMBER: position of protonation info from constant pH run Kenley Barrett
- Re: Re: AMBER: bad atom type: H alice
Thursday, 16 June 2005
- AMBER: Cut pdb files Yogesh Sabnis
- Re: AMBER: fail of minimization in sander wendy
- AMBER: adenine test for LMOD in amber8 Giulio Rastelli
- Re: AMBER: fail of minimization in sander Carlos Simmerling
- Re: AMBER: adenine test for LMOD in amber8 Istvan Kolossvary
- AMBER: How to modify force constants and equalibrium values for standard residues Li Su
- Re: AMBER: How to modify force constants and equalibrium values for standard residues David A. Case
- Re: AMBER: fail of minimization in sander David A. Case
- AMBER: Installation problem. . Sukjoon Yoon
- Re: AMBER: Installation problem. . Mark Williamson
- Re: AMBER: Installation problem. . Mark Williamson
- AMBER: Question about GAFF atom types Herbert Georg
- RE: AMBER: How to modify force constants and equalibrium values for standard residues Ross Walker
- AMBER: For calculating the energy rised from deviation of equalibrium values of bond angles does amber use degree or radians Li Su
- RE: AMBER: For calculating the energy rised from deviation of equalibrium values of bond angles does amber use degree or radians Ross Walker
- Re: AMBER: For calculating the energy rised from deviation of equalibrium values of bond angles does amber use degree or radians Li Su
- Re: AMBER: fail of minimization in sander wendy
- Re: AMBER: Installation problem. . Andreas Svrcek-Seiler
Friday, 17 June 2005
- AMBER: antechamber problems hj zou
- Re: AMBER: How to modify force constants and equalibrium values for standard residues gsciaini
- RE: AMBER: Installation problem. . Ross Walker
- RE: AMBER: Installation problem. . Andreas Svrcek-Seiler
- RE: AMBER: Installation problem - wrong address Andreas Svrcek-Seiler
- RE: AMBER: Installation problem. . Ross Walker
- AMBER: RE: AMBER :LINMIN problem Ross Walker
- Re: AMBER: nmropt =1 AND ntr=1 in pmemd Furse, Kristina Elisabet
- Re: AMBER: Question about GAFF atom types Herbert Georg
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim
- Re: AMBER: nmropt =1 AND ntr=1 in pmemd Robert Duke
- Re: AMBER: Question about GAFF atom types Herbert Georg
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim
- AMBER: nonbond_list question . caoch.cherry.bio.titech.ac.jp
Saturday, 18 June 2005
- AMBER: Analysing my simulation data.. Vijay Manickam Achari
- Re: AMBER: Analysing my simulation data.. Varsha Goyal
- Re: AMBER: Analysing my simulation data.. Ilyas Yildirim
- Re: AMBER: nonbond_list question . Michael Crowley
- Re: AMBER: nonbond_list question . Robert Duke
Sunday, 19 June 2005
- Re: AMBER: nonbond_list question . Petr Kulhanek
- AMBER: antechamber problems hj zou
- Re: AMBER: nonbond_list question . Robert Duke
- AMBER: average structure emilia wu
- RE: AMBER: average structure Ross Walker
Monday, 20 June 2005
- AMBER: How to set the virtual box size for a calculation run in vacuum Li Su
- RE: AMBER: antechamber problems Junmei Wang
- Re: AMBER: Question about GAFF atom types Herbert Georg
- RE: AMBER: runtime error in sander? Dave S Walker
- AMBER: How to turn off pme when using periodic box Li Su
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim
- RE: AMBER: How to turn off pme when using periodic box Ross Walker
- Re: AMBER: antechamber problems Shulin Zhuang
- AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim
Tuesday, 21 June 2005
- AMBER: large std error in entropy estimation Ye Mei
Wednesday, 22 June 2005
- AMBER: PBSA error: PB bomb in pd_aaradi Xin Hu
- Re: AMBER: PBSA error: PB bomb in pd_aaradi JunJun Liu
- AMBER: a question about varying positions of dihedral restraints with step number Li Su
- AMBER: question about Carnal opitz.che.udel.edu
- Re: AMBER: question about Carnal Bill Ross
- AMBER: RE: tutorial 8 Ross Walker
- AMBER: software for real polymer MD simulation xhu1.memphis.edu
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends FyD
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim
Thursday, 23 June 2005
- AMBER: how the phosphated threonine to be recognized in leap haixiao jin
- AMBER: Parameters for phosphorylated amino acids Nadine Homeyer
- AMBER: Parameters for phosphorylated amino acids Nadine Homeyer
- AMBER: Searching for NAD parameter files / Problems with parameter file creation Daniel Wetzler
- RE: AMBER: Searching for NAD parameter files / Problems with parameter file creation Rhoad, Jonathan S.
- RE: AMBER: Searching for NAD parameter files / Problems with parameter file creation Ross Walker
- AMBER: GCC for AMBER on 64 bit machine mfyang
- Re: AMBER: large std error in entropy estimation David A. Case
- Re: AMBER: GCC for AMBER on 64 bit machine Andreas Svrcek-Seiler
- Re: AMBER: Parameters for phosphorylated amino acids Suxin Zheng
- AMBER: using xmgrace.... Vijay Manickam Achari
Friday, 24 June 2005
- Re: AMBER: a question about varying positions of dihedral restraints with step number David A. Case
- AMBER: Have the parameters for dUMP been calculated by somebody? Suxin Zheng
- AMBER: TI-FEP for ALA --> GLY Jiten
- Re: AMBER: TI-FEP for ALA --> GLY Ilyas Yildirim
Saturday, 25 June 2005
- Re: AMBER: TI-FEP for VAL --> ALA Jiten
- AMBER: RED question Kara Di Giorgio
- Re: AMBER: TI-FEP for VAL --> ALA Ilyas Yildirim
Sunday, 26 June 2005
- AMBER: MM_PBSA ! Pradipta Bandyopadhyay
- Re: AMBER: MM_PBSA ! Jiten
- AMBER: Hbond analysis xueping
- Re: AMBER: TI-FEP for VAL --> ALA Jiten
- Re: AMBER: RED question FyD
- Re: AMBER: RED question Kara Di Giorgio
- AMBER: mm_pbsa script ! Pradipta Bandyopadhyay
Monday, 27 June 2005
- AMBER: Request for calculating free energy using AMBER6 S.Sundar Raman
- AMBER: parallel error Zhang Bing
- Re: AMBER: Hbond analysis Fabian Boes
- AMBER: INTRA molecular hbonds Giulio Rastelli
- Re: AMBER: INTRA molecular hbonds Fabian Boes
- AMBER: pb_pgb test fail acb15885.uprm.edu
- Re: AMBER: pb_pgb test fail David A. Case
- Re: AMBER: TI-FEP for VAL --> ALA Ilyas Yildirim
- Re: AMBER: TI-FEP for ALA --> GLY Jiten
- AMBER: script for calculating hydrogen bond Vijay Manickam Achari
- RE: AMBER: script for calculating hydrogen bond Ross Walker
- AMBER: questions about RNA xinhuang.indiana.edu
- Re: AMBER: TI-FEP for ALA --> GLY Ilyas Yildirim
Tuesday, 28 June 2005
- AMBER: calculating torsion angles Vijay Manickam Achari
Wednesday, 29 June 2005
- AMBER: dielectric constant Germán Sciaini
Tuesday, 28 June 2005
- AMBER: compiler error, SGI Octane Peter Gannett
- AMBER: amber 8 leap topology file dihedral term problem Angela Liu
- AMBER: Re: TI tutorial Jiten
- AMBER: Fw: TI tutorial --> ALA --> GLY TI calculation Jiten
- Re: AMBER: Re: TI tutorial David A. Case
- Re: AMBER: Re: TI tutorial Jiten
- Re: AMBER: dielectric constant David LeBard
- Re: AMBER: Re: TI tutorial David A. Case
- AMBER: calculating hydrogen bonds Vijay Manickam Achari
- Re: AMBER: Re: TI tutorial Jiten
- AMBER: How to read unformatted restart file in PTRAJ ? JunJun Liu
Wednesday, 29 June 2005
- Re: AMBER: Is the MD simulation normal Shulin Zhuang
- Re: AMBER: Re: TI tutorial David A. Case
- Re: [pgannett.hsc.wvu.edu: AMBER: compiler error, SGI Octane] Roberto Gomperts
- Re: AMBER: Is the MD simulation normal Shulin Zhuang
- RE: AMBER: Is the MD simulation normal Ross Walker
- Re: AMBER: Re: TI tutorial Jiten
- Re: AMBER: RED question FyD
- Re: AMBER: Re: TI tutorial David A. Case
- Re: AMBER: Re: TI tutorial Jiten
- AMBER: error - compiling antechamber Peter Gannett
- Re: AMBER: error - compiling antechamber Roberto Gomperts
- AMBER: Free energy calculation for protein-protein complex using MM_PBSA Zhiguo Liu
- AMBER: acceptor and donor in hbond calculation Vijay Manickam Achari
- AMBER: example script for hbond calculation Vijay Manickam Achari
Thursday, 30 June 2005
- Re: AMBER: Free energy calculation for protein-protein complex using MM_PBSA Thomas Steinbrecher
- Re: Re: AMBER: Free energy calculation for protein-protein complex usingMM_PBSA Zhiguo Liu
- Re: AMBER: Free energy calculation for protein-protein complex usingMM_PBSA Martin Sippel
- Re: AMBER: Is the MD simulation normal Shulin Zhuang
- Re: AMBER: Is the MD simulation normal Shulin Zhuang
- AMBER: 10-12 potential and create atom type Fabien CAILLIEZ
- AMBER: antechamber error Peter Gannett
- Re: AMBER: antechamber error David A. Case
- AMBER: Create new Unit Douali, Latifa
- Re: AMBER: Create new Unit David A. Case

Last message date: Fri Jul 01 2005 - 02:53:00 PDT
Archived on: Fri Apr 19 2024 - 05:53:11 PDT

Amber Archive Jun 2005 by date