AMBER: INTRA molecular hbonds

From: Giulio Rastelli <rastelli.giulio.unimo.it>
Date: Mon, 27 Jun 2005 16:09:23 +0200

By default, if I'm correct the hbond analysis made with ptraj (amber8)
computes the inter-molecular hbonds between atoms specified as donors
and acceptors. Is there a way to keep track of INTRA-molecular hbonds as
well? Many thanks in advance.
Giulio 
-- 
Prof. Giulio Rastelli
Dipartimento di Scienze Farmaceutiche
Facolta' di Bioscienze e Biotecnologie
Universita' di Modena e Reggio Emilia
Via Campi 183
41100 Modena - ITALY
-------------------------------------
tel 0039-059-2055145
fax 0039-059-2055131
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Received on Mon Jun 27 2005 - 15:53:00 PDT
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