Re: AMBER: Vibrational spectrum? [SOLUTION]

From: Mark Williamson <>
Date: Fri, 10 Jun 2005 11:33:51 +0100

> GaussVies, HyperChem ...). Does any software read NMODE outputs and do

It is possible to visualize the nmode vector output file in conjunction
with VMD ( ) using a tool called
IED ( ).

IED is generally used to carry out PCA ( principle component analysis )
   visualization , but can be used for nmode output. One has to generate
a pdb of the system you are examining as well as the nmode vector
output. Leave the "Projections files" box empty and it should work fine.
There are further instructions on the IED site.


Mark Williamson

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Received on Fri Jun 10 2005 - 11:53:00 PDT
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