Hello,
I dock molecules not in a whole protein but in a cut
pdb file (around 10Å to enhance the speed of
calculations), I was wondering if the cut pdb files
canbe opened in Amber8.0
I dock molecules in QXP/FLO which uses compressed
macromodel file format. I subject the ligand to
multiple conversions and am able to create the .prep
and .parm files for the ligand. But when I try to load
the complex, the program crashes. I am attaching the
leap.log file.
I would appreciate if you could throw light on this
issue. Let me know if you need more indepth report.
Thank you
Kind regards,
Yogesh
########################
Yogesh Sabnis, PhD
BMC, Box 574,
Avd Org. Farm. Kemi,
Husargatan 3,
Uppsala - 751 23
Sweden
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Received on Thu Jun 16 2005 - 09:53:00 PDT
