AMBER: calculating hydrogen bonds

From: Vijay Manickam Achari <>
Date: Wed, 29 Jun 2005 03:50:36 +0100 (BST)

Dear amber users,

I have used ptraj to calculate hydrogen bond between
residues of my micelle structure.
I have got the output file. How do I do the
calculattion to get the hydrogen bond between defined
atoms in my residues?
For view I attached the output file.

Can any one show and help me how to calculate that



How much free photo storage do you get? Store your holiday
snaps for FREE with Yahoo! Photos

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to

Received on Wed Jun 29 2005 - 04:53:00 PDT
Custom Search