I start sander like this "sander -O -i ***.in -o ***.out -c ***.inpcrd -p
***.prmtop -r ***.rst". I have try to use my ".in" input file to minimize
the DNA structure in tutorial 1 and get normal output file.
By the way, I run sander in remote computer by sending the jobs by remote
logon. And I didn't find out batch output file.
Thank you !
----- Original Message -----
From: "Bill Ross" <ross.cgl.ucsf.edu>
To: <amber.scripps.edu>
Sent: Monday, June 06, 2005 11:50 AM
Subject: Re: AMBER: fail of minimization in sander
>> when I begin minimization with sander, =
>> the output file contain nothing.
>
> How do you start sander? Is there any output to the screen
> or batch output file or -?
>
> Bill
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