AMBER: atom type question

From: <>
Date: Mon, 13 Jun 2005 15:41:30 -0400
('binary' encoding is not supported, stored as-is) Dear Amber Community

I'm working with a small molecule binding in a protein. The small
molecule is defined in the gaff atom types, while the protein is defined
by the parm99 parameters.
In this arrangement the minimization crashes saying:
"bad atom type: c3"
Does this mean that the two atom types are not compatible and I just have
to use the atom type definitions from parm99 instead of gaff?

Best Regards,


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Received on Mon Jun 13 2005 - 20:53:01 PDT
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