Amber Archive Mar 2001: by author

A. Ababou
- Ca2+ parameters and how ? ... (Sat Mar 31 2001 - 07:07:39 PST)
- Water Box ... (Fri Mar 09 2001 - 08:43:05 PST)
A.Madhumalar
- Generating C-DNA using nucgen! (Sun Mar 11 2001 - 00:31:16 PST)
Andrea Bernini
- GIBBS (Thu Mar 01 2001 - 03:20:07 PST)
Andreas Svrcek-Seiler
- Re: Question about installing AMBER (Wed Mar 21 2001 - 02:31:22 PST)
- Principal component analysis (Fri Mar 09 2001 - 11:11:21 PST)
Andrew Petersen
- Machine_g77_lam-mpi (Mon Mar 26 2001 - 13:33:27 PST)
Anita Ilze Zvaigzne
- Re: lipid bilayer MD simulations (Tue Mar 06 2001 - 16:45:45 PST)
Ann Hermone
- PME with octahedral box (Tue Mar 20 2001 - 10:01:05 PST)
- PME with octahedral box (Mon Mar 19 2001 - 13:31:16 PST)
Anna Ferrari
- PROFEC (Fri Mar 02 2001 - 02:57:28 PST)
Anwer Mujeeb
- Re: (No Subject) (Thu Mar 08 2001 - 10:30:17 PST)
B $BM4
- About the input of GIbbs and parm98 and Monte Carlo (Sorry for my mistake) (Fri Mar 09 2001 - 06:54:03 PST)
- About the input of GIbbs and parm98 and Monte Carlo (Fri Mar 09 2001 - 06:33:17 PST)
Bill Ross
- Re: parm warnings (Wed Mar 28 2001 - 11:58:17 PST)
- Re: loading prmtop and inpcrd into leap (Wed Mar 28 2001 - 10:37:38 PST)
- Re: Combining trajectories (Wed Mar 28 2001 - 09:35:54 PST)
- Re: PMF input file (Tue Mar 27 2001 - 11:18:18 PST)
- Re: Combining trajectories (Tue Mar 27 2001 - 08:53:58 PST)
- Re: How tleap does not add missing H atoms? (Mon Mar 26 2001 - 12:10:08 PST)
- Re: periodic box size (Mon Mar 26 2001 - 12:06:08 PST)
- Re: How tleap does not add missing H atoms? (Mon Mar 26 2001 - 09:54:34 PST)
- (no subject) (Thu Mar 22 2001 - 09:44:16 PST)
- Re: GIBBS error (Wed Mar 21 2001 - 16:07:56 PST)
- Re: amber6 compilation failure (fwd) (Tue Mar 20 2001 - 13:40:51 PST)
- Re: carnal problem (Fri Mar 16 2001 - 14:09:56 PST)
- Re: Selection (Wed Mar 14 2001 - 14:11:32 PST)
- Re: why the slowdown? (Wed Mar 14 2001 - 13:34:10 PST)
- Re: SHAKE (Thu Mar 08 2001 - 11:22:13 PST)
- Re: lipid bilayer MD simulations (Tue Mar 06 2001 - 11:48:02 PST)
- Re: lipid bilayer MD simulations (Tue Mar 06 2001 - 11:06:44 PST)
- re: leap adding terminal phosphates (Mon Mar 05 2001 - 12:27:27 PST)
c724128
- PMF input file (Tue Mar 27 2001 - 11:14:18 PST)
- PMF input file (Tue Mar 27 2001 - 03:48:11 PST)
- PMF-input file (Tue Mar 27 2001 - 03:40:03 PST)
Carlos Simmerling
- Re: Average structure (Thu Mar 29 2001 - 09:55:55 PST)
- Re: Problem of running sander on Linux cluster (Mon Mar 19 2001 - 09:03:02 PST)
chomsri upkaew
- Problem of running sander on Linux cluster (Mon Mar 19 2001 - 07:24:59 PST)
- Can't compile sander witk parallel on Linux cluster (Fri Mar 16 2001 - 03:54:27 PST)
- (no subject) (Fri Mar 16 2001 - 01:36:38 PST)
Chris Chipot
- Post-doctoral position available (Sat Mar 17 2001 - 10:21:59 PST)
- [charmm-bbs] Post-doctoral position available (Sat Mar 17 2001 - 10:21:59 PST)
Christian Pilger
- compilation problems (Sun Mar 04 2001 - 07:03:34 PST)
Chuck Schneider
- Re: compilation problems (Mon Mar 05 2001 - 05:20:18 PST)
David Case
- Re: your mail (Thu Mar 22 2001 - 14:11:32 PST)
- Re: SP3 name list (Thu Mar 22 2001 - 07:43:37 PST)
- Re: sander VS sander_classic (Thu Mar 08 2001 - 10:53:51 PST)
- Re: SHAKE (Thu Mar 08 2001 - 09:28:28 PST)
- Re: imaging in amber6 (Fri Mar 02 2001 - 09:05:39 PST)
David Konerding
- Re: Average structure (Thu Mar 29 2001 - 08:27:08 PST)
- Re: Combining trajectories (Wed Mar 28 2001 - 08:10:30 PST)
- Re: parallel load difference under linux (long) (Thu Mar 22 2001 - 12:58:23 PST)
- Re: PME with octahedral box (Tue Mar 20 2001 - 10:43:11 PST)
- Re: Problem of running sander on Linux cluster (Mon Mar 19 2001 - 08:22:31 PST)
- Re: Can't compile Sander with parallel on Linux cluster (Fri Mar 16 2001 - 09:54:10 PST)
- (no subject) (Fri Mar 16 2001 - 09:28:06 PST)
- Re: Pentium 4 (Mon Mar 05 2001 - 11:57:04 PST)
David Skinner
- Re: amber6 compilation failure (fwd) (Tue Mar 20 2001 - 13:09:49 PST)
- Re: AMBER6 on IBMSP3 (Tue Mar 13 2001 - 08:18:19 PST)
Elsa Sousa Henriques
- Re: Resp (Wed Mar 28 2001 - 17:25:53 PST)
Eoin Galligan
- MM-PBSA (Mon Mar 12 2001 - 07:34:20 PST)
- calc free energy during dynamics (Thu Mar 08 2001 - 03:23:10 PST)
Florian Barth
- Amber 6.0 Benchmarks (Thu Mar 22 2001 - 02:54:18 PST)
Francois Dupradeau
- anal ouput (Mon Mar 05 2001 - 00:40:14 PST)
Giulio Rastelli
- Re: questions about Sander (Wed Mar 07 2001 - 02:52:16 PST)
Guanglei Cui
- RE: LEaP adding an extra hydrogen to N-terminus (Thu Mar 29 2001 - 07:48:05 PST)
- RE: Average structure (Thu Mar 29 2001 - 07:42:38 PST)
- RE: ptraj resolved; irest=1? (Thu Mar 15 2001 - 08:08:01 PST)
Heather A.Carlson
- Post-doctoral position available (Wed Mar 28 2001 - 14:51:37 PST)
- [charmm-bbs] Post-doctoral position available (Wed Mar 28 2001 - 14:51:37 PST)
Heirich, Alan
- RE: Pentium 4 (Mon Mar 05 2001 - 12:47:08 PST)
Jake Isaacs
- Missing "ASH" parameters (Thu Mar 29 2001 - 10:09:01 PST)
- Re: LEaP adding an extra hydrogen to N-terminus (Thu Mar 29 2001 - 07:31:04 PST)
- loading prmtop and inpcrd into leap (Wed Mar 28 2001 - 08:13:06 PST)
- periodic box size (Mon Mar 26 2001 - 10:40:49 PST)
- recommended vs. default values (Mon Mar 05 2001 - 13:22:43 PST)
Jamal G. Musaev
- amber6 compilation failure (fwd) (Tue Mar 20 2001 - 12:29:55 PST)
Jarrod Smith
- Re: How tleap does not add missing H atoms? (Mon Mar 26 2001 - 10:47:50 PST)
- Re: SGI_MP (was "your mail") (Fri Mar 23 2001 - 10:27:09 PST)
- Re: your mail (Thu Mar 22 2001 - 14:38:16 PST)
- Re: (No Subject) (Thu Mar 08 2001 - 11:59:36 PST)
- Re: sander VS sander_classic (Thu Mar 08 2001 - 11:03:59 PST)
- Re: (No Subject) (Thu Mar 08 2001 - 07:45:51 PST)
Jean-Fran�ois Gibrat
- Re: Xleap (Tue Mar 27 2001 - 01:55:16 PST)
- Xleap (Tue Mar 27 2001 - 01:19:01 PST)
jim caldwell
- Re: AMBER (Thu Mar 01 2001 - 08:42:03 PST)
Jithesh P.V
- How to remove CIO from prmtop & crd (Thu Mar 29 2001 - 01:21:25 PST)
- makeDIST_RST (Wed Mar 07 2001 - 07:40:48 PST)
jllo
- Question about installing AMBER (Tue Mar 20 2001 - 19:46:40 PST)
Jose Ramon Blas
- Pentium IV compiler in MD (Thu Mar 01 2001 - 13:11:08 PST)
Joseph Nachman
- carnal problem (Fri Mar 16 2001 - 11:58:45 PST)
Khatcharin Siriwong
- Average structure (Thu Mar 29 2001 - 07:07:11 PST)
- Re: Xleap (Tue Mar 27 2001 - 01:42:34 PST)
- How to calculate energy from mdcrd output file (Wed Mar 14 2001 - 06:23:47 PST)
- sander VS sander_classic (Thu Mar 08 2001 - 10:18:44 PST)
kiyean.nam_at_pharma.Novartis.com
- GIBBS error (Wed Mar 21 2001 - 14:02:35 PST)
- LEAP (Thu Mar 15 2001 - 15:01:43 PST)
Laurent Chiche
- Re: Average structure (Thu Mar 29 2001 - 08:01:32 PST)
Lillian Chong
- Minimization and NSNB (Wed Mar 28 2001 - 10:59:15 PST)
marin
- parameters for NADH (Thu Mar 29 2001 - 13:28:25 PST)
Matthew Davies
- Dummy Atoms (Thu Mar 01 2001 - 05:58:14 PST)
Michael Cooney
- nstlim in sander (Tue Mar 27 2001 - 10:12:08 PST)
- Re: DNA out of a box (Wed Mar 21 2001 - 09:43:18 PST)
- variable NTWXM in Sander (Fri Mar 09 2001 - 14:54:23 PST)
- Re: SHAKE (Thu Mar 08 2001 - 09:39:51 PST)
- leap adding terminal phosphates (Mon Mar 05 2001 - 10:20:00 PST)
Michael Crowley
- Re: parallel load difference under linux (long) (Thu Mar 22 2001 - 13:31:08 PST)
- Re: Correction: SP3 name list (Thu Mar 22 2001 - 09:49:43 PST)
- Re: Correction: SP3 name list (Thu Mar 22 2001 - 09:46:21 PST)
Michael Ford
- Re: PBC box problems (Tue Mar 20 2001 - 10:10:17 PST)
- sugguestion! (Thu Mar 08 2001 - 10:26:36 PST)
Michal Otyepka
- ATP+Mg, P-tyrosine a P-threonine (Wed Mar 14 2001 - 02:35:53 PST)
Mihaly Mezei
- Re: force fields (Wed Mar 07 2001 - 11:44:26 PST)
Mite51_at_hotmail.com
- Test Group - swarm.ca (Mon Mar 19 2001 - 14:56:09 PST)
monica jain
- (No Subject) (Thu Mar 08 2001 - 00:50:03 PST)
Nathalie Godbout
- Re: SGI_MP (was "your mail") (Fri Mar 23 2001 - 11:54:14 PST)
- Re: your mail (Fri Mar 23 2001 - 09:27:19 PST)
Pascal Bonnet
- Re: ptraj image for octahedral box (Tue Mar 13 2001 - 17:28:47 PST)
- Re: using "radial" in PTRAJ (Fri Mar 09 2001 - 09:26:17 PST)
- Re: AMBER (Thu Mar 01 2001 - 12:09:00 PST)
Peter Varnai
- Re: Combining trajectories (Wed Mar 28 2001 - 00:56:58 PST)
- ptraj resolved; irest=1? (Thu Mar 15 2001 - 07:29:54 PST)
- ptraj image for octahedral box (Tue Mar 13 2001 - 07:47:28 PST)
Raik Gruenberg
- sander energy data (Thu Mar 08 2001 - 09:24:28 PST)
Ramon Garduno
- Q about RESP (Mon Mar 05 2001 - 11:35:47 PST)
rathinavelan thenmalarchelvi
- error in sander (Wed Mar 21 2001 - 04:12:23 PST)
Riccardo Nifosi
- imaging in amber6 (Fri Mar 02 2001 - 07:52:15 PST)
Robert Matthew Fesinmeyer
- Pentium 4 (Mon Mar 05 2001 - 11:01:26 PST)
Ronald Kuehne
- Post-doctoral Position (Wed Mar 28 2001 - 16:51:26 PST)
- [charmm-bbs] Post-doctoral Position (Wed Mar 28 2001 - 16:51:26 PST)
Ross Walker
- RE: Xleap (Tue Mar 27 2001 - 02:12:09 PST)
- RE: Can't compile Sander with parallel on Linux cluster (Fri Mar 16 2001 - 07:05:49 PST)
- RE: Can't compile sander witk parallel on Linux cluster (Fri Mar 16 2001 - 04:54:07 PST)
- Amber Website - UK Mirror (Tue Mar 06 2001 - 02:47:28 PST)
samantha hughes
- Re: calc free energy during dynamics (Thu Mar 08 2001 - 02:48:20 PST)
Sanjeev B.S.
- LEaP compilation (Wed Mar 28 2001 - 22:00:27 PST)
- Compilation of LEaP on SP3 (Wed Mar 28 2001 - 00:02:02 PST)
- SP3 benchmark (Mon Mar 26 2001 - 02:44:26 PST)
- SP3 MACHINE file (Sat Mar 24 2001 - 04:59:50 PST)
- Correction: SP3 name list (Wed Mar 21 2001 - 22:47:53 PST)
- SP3 name list (Wed Mar 21 2001 - 11:10:13 PST)
- RE: AMBER6 on IBMSP3 Installation (Tue Mar 20 2001 - 11:53:07 PST)
- AMBER6 on IBMSP3 Installation (Tue Mar 20 2001 - 06:07:05 PST)
- Re: AMBER6 on IBMSP3 (Fri Mar 16 2001 - 10:03:22 PST)
- AMBER6 on IBMSP3 (Tue Mar 13 2001 - 03:59:55 PST)
- Parm98 for amino acids? (Wed Feb 28 2001 - 22:09:16 PST)
Svetlana Nolde
- Interface (Mon Mar 05 2001 - 06:59:02 PST)
thenmalar rathinavelan
- how to get dials_and_windows (Fri Mar 30 2001 - 00:23:41 PST)
Thomas A. Spraggins
- RE: AMBER6 on IBMSP3 Installation (Tue Mar 20 2001 - 05:09:27 PST)
- RE: Problem of running sander on Linux cluster (Mon Mar 19 2001 - 10:54:49 PST)
- RE: Problem of running sander on Linux cluster (Mon Mar 19 2001 - 08:23:12 PST)
- RE: Can't compile Sander with parallel on Linux cluster (Fri Mar 16 2001 - 09:37:24 PST)
Thomas Cheatham
- RE: AMBER6 on IBMSP3 Installation (Tue Mar 20 2001 - 10:45:40 PST)
Thomas Huber
- Re: lipid bilayer MD simulations (Wed Mar 07 2001 - 10:19:12 PST)
- Re: lipid bilayer MD simulations (Tue Mar 06 2001 - 14:01:34 PST)
Troy Bothwell
- parm warnings (Wed Mar 28 2001 - 10:48:50 PST)
- Combining trajectories (Tue Mar 27 2001 - 08:45:54 PST)
- Question about prep file (Fri Mar 23 2001 - 16:39:42 PST)
- curves (Sun Mar 04 2001 - 15:27:05 PST)
Tru Huynh
- Re: Machine_g77_lam-mpi (Tue Mar 27 2001 - 01:39:53 PST)
- Re: parallel load difference under linux (long) (Fri Mar 23 2001 - 03:43:28 PST)
- parallel load difference under linux (long) (Thu Mar 22 2001 - 12:01:47 PST)
- Re: Amber 6.0 Benchmarks (Thu Mar 22 2001 - 05:26:10 PST)
- Re: Can't compile sander witk parallel on Linux cluster (Fri Mar 16 2001 - 04:14:14 PST)
txyang
- (no subject) (Thu Mar 22 2001 - 04:54:18 PST)
- questions about Sander (Wed Mar 07 2001 - 00:46:02 PST)
- questions about Sander (Wed Mar 07 2001 - 00:41:45 PST)
Wing Lok Abe Kurtz
- RE: curves (Sun Mar 04 2001 - 16:46:54 PST)
Xavier Deupi
- summary: lipid bilayer MD simulations (Fri Mar 16 2001 - 04:01:46 PST)
- lipid bilayer MD simulations (Wed Mar 07 2001 - 06:01:15 PST)
Xiaolin Chuang
- How tleap does not add missing H atoms? (Mon Mar 26 2001 - 08:07:19 PST)
- DNA out of a box (Sat Mar 17 2001 - 05:08:56 PST)
xin hu
- problem with Leap (Fri Mar 30 2001 - 05:08:41 PST)
Yanni Wang
- Membrane (Fri Mar 30 2001 - 00:31:34 PST)
- Resp (Wed Mar 28 2001 - 05:24:04 PST)
Yong Duan
- RE: parallel load difference under linux (long) (Thu Mar 22 2001 - 14:51:05 PST)
Yongxing Liu
- RE: Average structure (Thu Mar 29 2001 - 11:51:05 PST)
- (no subject) (Mon Mar 19 2001 - 10:58:49 PST)
- (no subject) (Tue Mar 06 2001 - 09:42:54 PST)
yu kaneko
- GIBSS pertType (Thu Mar 22 2001 - 04:58:28 PST)
- Again Gibbs... (Sat Mar 10 2001 - 00:12:10 PST)
Yuguang Mu
- helix analyse (Fri Mar 30 2001 - 09:20:21 PST)
Zhangxd
- parameter (Tue Mar 06 2001 - 14:20:35 PST)
- about prep input (Thu Mar 01 2001 - 05:40:23 PST)

Amber Archive Mar 2001 by author