I'm studyin a protein-peptide complex. The protein is 101 aa long
(numbered 1 to 101), the peptide is 8 aa long (numbered 102 to 109). I'm
trying to generate a list of residues within 10. Angstroms from the
peptide, by using the following carnal input:
OUTPUT
TABLE t1 id%residues;
(2) What do I have to specify in the TABLE line in the OUTPUT section?
CUTRES output goes to stdout (or -o outfile, if specified).
TABLEs are tabular things unsuited for amber GROUP format.
(1) CUTRES selects only the peptide residues
When it runs, you will see what it selects.
Bill Ross
Received on Fri Mar 16 2001 - 14:09:56 PST
