ptraj image for octahedral box

From: Peter Varnai <>
Date: Tue 13 Mar 2001 16:47:28 +0100 (CET)

Dear Amber Users,

I am trying to postprocess a trajectory of a simulation
in a octahedral box to get the water molecules back to
the box around a DNA (atoms 1-762):

image center familiar com :1-762

The result is a discontinuous, fragmented water environment
around the DNA. Help on how to do this correctly with ptraj
(amber6) is welcome!

Thank you,
Peter Varnai
Received on Tue Mar 13 2001 - 07:47:28 PST
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