Dear chomsri,
I have it working no problem. You need to have mpich-1.2.1 as there are
known issues with 1.2.0 (e.g parallel IO is broken) under linux. Go to
www-unix.mcs.anl.gov/mpi/mpich/indexold.html to download a copy of the 1.2.1
source.
I would avoid using the portland group compilers for compiling Amber with
mpi support as I have encountered numerous problems such as Unit 5 Error on
open. Something is very strange and hard to sort out. Stick to just the
gnu compilers which work fine (egcs 2.95).
I have included a copy of my machine.g77_mpich configuration file that you
may want to compare against yours.
All the best
Ross
/\
\/
|\oss Walker
| Imperial College of Science, Technology & Medicine |
| Department of Chemistry | Theoretical Division |
| Tel:- +44 207 59(45851) / +44 7958 970896 |
| EMail:-
http://ross.ch.ic.ac.uk |
| PGP Key available on request |
Please note:
The above message is not necessarily the views of the author, Imperial
College or The Department of Chemistry. The author of this message accepts
no responsibility for any offence caused. If this message is forwarded to
anyone not on the original contact list then the responsibility lies solely
with the person forwarding the email and not with the author.
> -----Original Message-----
> From: chomsri upkaew [mailto:uchomsri_at_hotmail.com]
> Sent: 16 March 2001 11:54
> To: amber_at_cgl.ucsf.edu
> Subject: Can't compile sander witk parallel on Linux cluster
>
>
> Dear All,
>
> Did anyone compile sander with parallel on Linux cluster machine? I can't
> compile it. My machine is Linux SuSE 6.2 containing absoft, f77, pgf77,
> pgf90 and g77 compilers, including mpich-1.2.0 library.
>
> When I compiled with machine file 'Machine.g77_mpich', I obtained error
> message as below.
>
> ..
> ..
> ..
> checksz.o: warning: multiple common of `misc5i_'
> lesmain.o: warning: previous common is here
> checksz.o: warning: multiple common of `misc6i_'
> lesmain.o: warning: previous common is here
> .../lib/mexit.o: In function `mexit_':
> .../lib/mexit.o(.text+0x36): undefined reference to `mpi_abort__'
> .../lib/mexit.o(.text+0x46): undefined reference to `mpi_finalize__'
> .../lib/mexit.o(.data+0x0): undefined reference to `mpi_dup_fn__'
> .../lib/mexit.o(.data+0x4): undefined reference to `mpi_null_delete_fn__'
> .../lib/mexit.o(.data+0x8): undefined reference to `mpi_null_copy_fn__'
> collect2: ld returned 1 exit status
> make[1]: *** [addles] Error 1
> make[1]: Leaving directory `/users/siriwong/amber6/src/addles'
> make: *** [install] Error 2
>
> Could you please suggest me how to compile?
>
> Thank you very much for your suggestion.
>
> Regards,
> Uchom
> _________________________________________________________________________
> Get Your Private, Free E-mail from MSN Hotmail at http://www.rosswalker.co.uk/adsense_alternatives/.
>
>
>
Attachment Converted: "c:\eudora\attach\Machine.g77_mpich"
Received on Fri Mar 16 2001 - 04:54:07 PST
