Amber Archive Jan 2006 by subject
- AMBER: A few problems on the parameterisation of a Glutamine residue
- AMBER: about mmpbsa
- AMBER: About placing counter ions
- AMBER: About preparing Zn.lib
- AMBER: About the unit of the projection onto eigenvectors
- AMBER: About tleap
- AMBER: ACTIVE SITE
- AMBER: amber
- AMBER: AMBER 7 and restrained bonds.
- AMBER: Amber 8 install problem
- AMBER: AMBER 8.0 : Octane Implicit Solvent?
- AMBER: amber atom type -> length of name
- AMBER: amber: problem in center command
- AMBER: anal vs sander
- AMBER: analysing water behavior during MD
- AMBER: antechamber
- AMBER: antechamber problem
- AMBER: ATCOR.dat format
- AMBER: atom type "O3" not recognized by XLeap
- AMBER: base-base interaction
- AMBER: bugfix for impropers in parmchk
- AMBER: Charges from NMR spin densities
- AMBER: Charges of enantiomers for Amber8
- AMBER: Could you help me about mmpbsa! thank you!
- AMBER: creating a RST file from specific set of binpos/crd file
- AMBER: Decomposed GB energy in idecomp=3 option
- AMBER: EEL and 1-4 EEL; VDWAALS and 1-4 VDWAALS
- AMBER: Gibbs pmf calculation
- AMBER: GLUTATHIONE
- AMBER: h-bond
- AMBER: heme improper torsions
- AMBER: How to run mm_pbsa_statistics.pl?
- AMBER: How to use PTRAJ to analyze the CA RMS diveations as a function of residue number?
- AMBER: IGB=10
- AMBER: Installation of AMBER8 on a PC with a Pentium EE type
- AMBER: Installation of AMBER8 on a PC with a Pentium EE type CPU
- AMBER: is there any relationship between RMSD and B-factor?
- AMBER: Leap
- AMBER: Leap compilation issues
- AMBER: lifetimes
- AMBER: Ligand charge
- AMBER: minimalization prior to nmode analysis, is it necessary?
- AMBER: MM-PBSA
- AMBER: monosaccharide residues
- AMBER: mpich Amber7 problem
- AMBER: MPICH on OpenMosix
- AMBER: Na+ with GB/SA?
- AMBER: NAD parameters
- AMBER: nmode calculations error
- AMBER: parallel compile problems on amber8
- AMBER: parameters for C=S
- AMBER: partial charge glycam
- AMBER: Problem in Antechamber
- AMBER: problem in center command
- AMBER: Problem in compiling AMBER8 parallel version
- AMBER: Problem in compiling sander with MMTSB
- AMBER: problem in saving parameter file for non-standard residue
- AMBER: problem with ssh and xleap
- AMBER: problem with the output file for free energy perturbation calculation
- AMBER: ptraj distance matrix
- AMBER: PTRAJ generating wrong dihedral angles
- AMBER: ptraj grid output
- AMBER: ptraj mask question
- AMBER: ptraj PCA
- AMBER: ptraj PCA: projection mask bug??
- AMBER: Q: results from PB solver in example no.3
- AMBER: regarding Hydrogen bond analysis
- AMBER: Release of RESP ESP charge DDatabase
- AMBER: requirement of delphi for mm_pbsa
- AMBER: rms in principal component analysis
- AMBER: SHAKE - ntc = 3
- AMBER: strange result of mm/pbsa
- AMBER: stripping trajectories: ptraj versus Carnal
- AMBER: the problem of mdcrd
- AMBER: Trimming ptraj output
- AMBER: water molecules with in 3 angstroms to the solute
- AMBER: Where to modify the atom type in sander?
- AMBER: Workshops
- REļ¼AMBER: the problem of mdcrd
- Last message date: Wed Feb 01 2006 - 06:10:06 PST
- Archived on: Wed Dec 25 2024 - 05:53:30 PST
