Re: AMBER: Problem in compiling sander with MMTSB

From: Scott Brozell <sbrozell.scripps.edu>
Date: Mon, 30 Jan 2006 19:44:06 -0800

Hi,

On Tue, 31 Jan 2006 luckyang.gmail.com wrote:

> Dear AMBER users,
>
> I am trying to compile sander with support for MMTSB and I get the following
> message:
>
> /usr/bin/ld: Warning: alignment 32 of symbol `_D_in_DECOMP' in decomp.o is
> smaller than 64 in runmd.o
> mmtsb.o(.text+0x1284): In function `MMTSB_NEWLAMBDA':
> : undefined reference to `NEWTEMP'
> mmtsb.o(.text+0x12de): In function `MMTSB_NEWLAMBDA':
> : undefined reference to `GETBIAS'
> mmtsb.o(.text+0x1390): In function `MMTSB_NEWTEMP':
> : undefined reference to `NEWTEMP'
> collect2: ld returned 1 exit status
> link failed.
> make: *** [sander] Error 1

Did you re-configure to request mmtsb ?

cd $AMBERHOME/src
./configure -mmtsb yada yada yada
cd sander
make ...

Scott

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Received on Tue Jan 31 2006 - 06:10:04 PST
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