AMBER: Problem in compiling sander with MMTSB

From: <>
Date: Tue, 31 Jan 2006 02:06:32 +0000

Dear AMBER users,

I am trying to compile sander with support for MMTSB and I get the following

/usr/bin/ld: Warning: alignment 32 of symbol `_D_in_DECOMP' in decomp.o is
smaller than 64 in runmd.o
mmtsb.o(.text+0x1284): In function `MMTSB_NEWLAMBDA':
: undefined reference to `NEWTEMP'
mmtsb.o(.text+0x12de): In function `MMTSB_NEWLAMBDA':
: undefined reference to `GETBIAS'
mmtsb.o(.text+0x1390): In function `MMTSB_NEWTEMP':
: undefined reference to `NEWTEMP'
collect2: ld returned 1 exit status
link failed.
make: *** [sander] Error 1

Do you have any idea about this problem?

Thank you very much for your suggestions.

Lu Yang
Department of Chemical & Biomolecular Engineering
Tulane University

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Received on Tue Jan 31 2006 - 06:10:04 PST
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