AMBER: parameters for C=S

From: <alexandra.marques.fc.up.pt>
Date: Mon, 09 Jan 2006 14:53:30 +0000

Hi to all

I used antechamber to derive parameters for a ligand. However, I could not get
parameters for a region in which a carbon is double bonded to sulfur; this
carbon is in a ring and is also connected to a N and C (R-N-CS-C-R).
Antechamber did not recognize the S (it recognized S as DU) and all the
parameters involving this S had the following statement: ATTN, need revision.
I think this strange because in table 1 of the antechamber article (2004) the
atom types for carbon double bonded to sulfur are defined.
Can any one there help me, please? Where do I can get parameters involving the
C=S?

Thank you very much
Alexandra


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Received on Tue Jan 10 2006 - 06:10:05 PST
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