Hi ...
... have a look at this answer from Thomas Cheatham, maybe it's suited
to solve your problem:
http://amber.ch.ic.ac.uk/archive/200411/0042.html
Bye,
Fabian
Vlad Cojocaru wrote:
> Dear amber users,
>
> I am interested to extract information about water from amber
> trajectories... For example to identify possible water channels in a
> protein or high occupancy water spots inside the macromolecule (having
> the results represented as color maps drawn according to occupancy).
> I have never done this type of analysis and I was wondering if
> anybody could point me to software that can do this or at least point me
> to some references that describe such type of analysis..
>
> Thank you very much in advance
> vlad
>
--
Fabian Bös
Institute of Technical Biochemistry
University of Stuttgart / Germany
Phone: +49-711-6857481
Fax: +49-711-6853196
Email: fabian.boes.itb.uni-stuttgart.de
http://www.itb.uni-stuttgart.de
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Received on Sat Jan 14 2006 - 06:10:06 PST
