dear amber firends,
According to "Hydrogen bonding in biological strucutre" by thomas
jeffrey book Donor atoms are the one which has hydrogen atom
covalently liked. And that hydrogen forms a week interaction with
another atom is called acceptor atom.
in your tutorial for ptraj commands (link attached below) says O atom
of peptide backbone is donor and O H of water as acceptor. i would
like to know is it right?
http://amber.scripps.edu/tutorial/ptraj/index.html
there is no manual for hbond command in amber ptraj command manual.
pls relpy me in this regrad.
thank you
--
S.Sundar Raman
Chemical Lab,
CLRI
Chennai-20
ph: 044-24411830
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Received on Wed Jan 11 2006 - 06:10:04 PST
