AMBER: is there any relationship between RMSD and B-factor?

From: haixiao jin <jinhx952.gmail.com>
Date: Thu, 19 Jan 2006 11:30:33 +0800

Dear Amber users,

     Two MD simulation were performed for a complex to test the importance
of a key conserved residues. there is the result of RMSD and B-factor I
obtained. The RMSD of simulation A is lower than that of simulation B, while
the B-factor of simultiaon A is larger than that of simulation B. is it
reasonable? Is there any relationship between RMSD and B-factor? Thank you
in advance!



-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu

bfactor.gif
(image/gif attachment: bfactor.gif)

rmsd.gif
(image/gif attachment: rmsd.gif)

Received on Thu Jan 19 2006 - 06:10:07 PST
Custom Search