Amber Archive Jul 2004 by thread
417 messages
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Starting
Thu Jul 01 2004 - 05:53:01 PDT,
Ending
Sat Jul 31 2004 - 05:53:00 PDT
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Re: AMBER: problems in using glycam
Wen-Chi Tseng
(Thu Jul 01 2004 - 05:44:27 PDT)
Re: AMBER: Amber 8 installation error
fangyu liang
(Thu Jul 01 2004 - 00:53:21 PDT)
Re: AMBER: Implicit MD simulation
Carlos Simmerling
(Thu Jul 01 2004 - 05:07:52 PDT)
AMBER: average structure using ptraj
NI AI
(Thu Jul 01 2004 - 09:18:34 PDT)
Re: AMBER: average structure using ptraj
Thomas E. Cheatham, III
(Thu Jul 01 2004 - 10:40:25 PDT)
Re: AMBER: average structure using ptraj
NI AI
(Fri Jul 02 2004 - 08:15:53 PDT)
AMBER: average using ptraj
Holly Freedman
(Thu Jul 08 2004 - 12:13:58 PDT)
RE: AMBER: average using ptraj
Ross Walker
(Thu Jul 08 2004 - 13:18:58 PDT)
AMBER: using ptraj
Carsten Detering
(Tue Jul 27 2004 - 14:10:02 PDT)
Re: AMBER: using ptraj
Scott
(Thu Jul 29 2004 - 14:15:17 PDT)
Re: AMBER: using ptraj
Carsten Detering
(Thu Jul 29 2004 - 15:11:11 PDT)
Re: AMBER: using ptraj
Scott
(Thu Jul 29 2004 - 15:48:19 PDT)
Re: AMBER: average structure using ptraj
Chris Moth
(Fri Jul 02 2004 - 10:11:42 PDT)
Re: AMBER: N-terminal Arg charges in ff99 not 1.00
Michael Dolan
(Thu Jul 01 2004 - 12:00:45 PDT)
Re: AMBER: N-terminal Arg charges in ff99 not 1.00
Michael Dolan
(Thu Jul 01 2004 - 12:04:37 PDT)
Re: AMBER: N-terminal Arg charges in ff99 not 1.00
David A. Case
(Thu Jul 01 2004 - 12:17:52 PDT)
Re: AMBER: N-terminal Arg charges in ff99 not 1.00
Michael Dolan
(Thu Jul 01 2004 - 12:57:37 PDT)
RE: AMBER: N-terminal Arg charges in ff99 not 1.00
Ross Walker
(Thu Jul 01 2004 - 13:13:00 PDT)
RE: AMBER: N-terminal Arg charges in ff99 not 1.00
Ross Walker
(Thu Jul 01 2004 - 12:17:02 PDT)
AMBER: no 'water.lib' in /amber8/dat/leap/
fangyu liang
(Thu Jul 01 2004 - 13:21:50 PDT)
Re: AMBER: no 'water.lib' in /amber8/dat/leap/
Rhonda Torres
(Thu Jul 01 2004 - 13:25:15 PDT)
RE: AMBER: no 'water.lib' in /amber8/dat/leap/
Ross Walker
(Thu Jul 01 2004 - 13:30:25 PDT)
AMBER: MAXRMSPT error in MOIL-view
Robyn Ayscue
(Thu Jul 01 2004 - 15:19:23 PDT)
Re: AMBER: MAXRMSPT error in MOIL-view
Carlos Simmerling
(Thu Jul 01 2004 - 15:26:53 PDT)
AMBER: tleap input file error
fangyu liang
(Thu Jul 01 2004 - 16:26:18 PDT)
Re: AMBER: tleap input file error
David A. Case
(Thu Jul 01 2004 - 17:06:18 PDT)
AMBER: peptide-DNA crosslink modeling
M. L. Dodson
(Thu Jul 01 2004 - 14:51:24 PDT)
Re: AMBER: peptide-DNA crosslink modeling
Carlos Simmerling
(Thu Jul 01 2004 - 18:42:48 PDT)
Re: AMBER: peptide-DNA crosslink modeling
David A. Case
(Thu Jul 01 2004 - 22:01:40 PDT)
Re: AMBER: peptide-DNA crosslink modeling
M. L. Dodson
(Fri Jul 02 2004 - 11:06:39 PDT)
AMBER: mm_pbsa problem
steven.j.enoch.gsk.com
(Fri Jul 02 2004 - 03:29:57 PDT)
Re: AMBER: mm_pbsa problem
david.evans.ulsop.ac.uk
(Fri Jul 02 2004 - 03:53:23 PDT)
Re: AMBER: mm_pbsa problem
David A. Case
(Fri Jul 02 2004 - 07:52:46 PDT)
AMBER: question about antechamber program
Sivanesan Dakshanamurthy
(Fri Jul 02 2004 - 11:42:07 PDT)
Re: AMBER: question about antechamber program
David A. Case
(Fri Jul 02 2004 - 13:26:12 PDT)
AMBER: best PC laptop system to run Amber 8
fangyu liang
(Sat Jul 03 2004 - 14:05:35 PDT)
Re: AMBER: best PC laptop system to run Amber 8
Andreas Svrcek-Seiler
(Sun Jul 04 2004 - 05:24:07 PDT)
Re: AMBER: best PC laptop system to run Amber 8
fangyu liang
(Sun Jul 04 2004 - 22:04:41 PDT)
Re: AMBER: About TI with sander
Chunhu Tan
(Sun Jul 04 2004 - 18:18:48 PDT)
Re: AMBER: About TI with sander
David A. Case
(Mon Jul 05 2004 - 08:31:23 PDT)
AMBER: Problem to converge minimization
Guillaume Bollot
(Mon Jul 05 2004 - 01:41:06 PDT)
Re: AMBER: Problem to converge minimization
Jiten
(Mon Jul 05 2004 - 05:38:26 PDT)
Re: AMBER: Problem to converge minimization
David A. Case
(Mon Jul 05 2004 - 08:22:01 PDT)
AMBER: "closestwater" algorithm
Grace Li
(Mon Jul 05 2004 - 15:42:08 PDT)
AMBER: Namelist problem
Vlad Cojocaru
(Mon Jul 05 2004 - 02:25:07 PDT)
Re: AMBER: Namelist problem
Guanglei Cui
(Mon Jul 05 2004 - 05:56:10 PDT)
Re: AMBER: Namelist problem
Vlad Cojocaru
(Mon Jul 05 2004 - 06:10:51 PDT)
Re: AMBER: Namelist problem
Viktor Hornak
(Mon Jul 05 2004 - 07:07:36 PDT)
Re: AMBER: Namelist problem
David A. Case
(Mon Jul 05 2004 - 08:21:12 PDT)
AMBER: details for Namelist problem
Vlad Cojocaru
(Mon Jul 05 2004 - 02:48:40 PDT)
AMBER: combination rules
German Sciaini
(Mon Jul 05 2004 - 05:31:43 PDT)
Re: AMBER: combination rules
David A. Case
(Mon Jul 05 2004 - 10:29:04 PDT)
AMBER: details for Namelist problem
Vlad Cojocaru
(Mon Jul 05 2004 - 06:22:33 PDT)
AMBER: leap problem in AMBER7 (residue insertion)
Kuhn, Bernd {PRBD~Basel}
(Mon Jul 05 2004 - 04:26:34 PDT)
Re: AMBER: leap problem in AMBER7 (residue insertion)
David A. Case
(Mon Jul 05 2004 - 10:21:50 PDT)
Re: AMBER: leap problem in AMBER7 (residue insertion)
Kuhn, Bernd {PRBD~Basel}
(Wed Jul 14 2004 - 04:44:00 PDT)
AMBER: Amber8 on Digital UNIX
Guillermo Mulliert Carlín
(Mon Jul 05 2004 - 08:30:15 PDT)
Re: AMBER: Amber8 on Digital UNIX
David A. Case
(Mon Jul 05 2004 - 09:55:20 PDT)
Re: AMBER: Amber8 on Digital UNIX
Guillermo Mulliert Carlín
(Wed Jul 07 2004 - 02:41:53 PDT)
AMBER: multiple heat bath GB+LES
Marcin Krol
(Mon Jul 05 2004 - 09:53:31 PDT)
AMBER: How to make leap recognise Zn2+?
Yongzhi Chen
(Mon Jul 05 2004 - 18:41:26 PDT)
Re: AMBER: How to make leap recognise Zn2+?
Guanglei Cui
(Tue Jul 06 2004 - 06:58:27 PDT)
Re: AMBER: How to make leap recognise Zn2+?
Yongzhi Chen
(Tue Jul 06 2004 - 09:00:26 PDT)
AMBER: sander on multiprocessors
cailliez
(Tue Jul 06 2004 - 00:38:39 PDT)
Re: AMBER: sander on multiprocessors
Stef
(Tue Jul 06 2004 - 01:42:36 PDT)
Re: AMBER: sander on multiprocessors
Andreas Svrcek-Seiler
(Tue Jul 06 2004 - 04:15:48 PDT)
AMBER: idecomp
Marcela Madrid
(Tue Jul 06 2004 - 08:42:20 PDT)
Re: AMBER: idecomp
David A. Case
(Tue Jul 06 2004 - 09:37:42 PDT)
Re: AMBER: idecomp
Marcela Madrid
(Thu Jul 08 2004 - 12:35:57 PDT)
AMBER: running MD simulatons
sachin patil
(Tue Jul 06 2004 - 09:52:58 PDT)
Re: AMBER: running MD simulatons
David A. Case
(Tue Jul 06 2004 - 11:40:50 PDT)
AMBER: Amber7 bugfix1
sachin patil
(Tue Jul 06 2004 - 10:47:38 PDT)
RE: AMBER: Amber7 bugfix1
Ross Walker
(Tue Jul 06 2004 - 11:17:49 PDT)
Re: AMBER: Amber7 bugfix1
David A. Case
(Tue Jul 06 2004 - 11:37:04 PDT)
AMBER: parameter development for nucleotide analogues
Vlad Cojocaru
(Wed Jul 07 2004 - 03:37:50 PDT)
RE: AMBER: parameter development for nucleotide analogues
Ross Walker
(Thu Jul 08 2004 - 10:49:33 PDT)
AMBER: name error
Prashansa Agrawal
(Wed Jul 07 2004 - 15:57:53 PDT)
RE: AMBER: name error
Ross Walker
(Thu Jul 08 2004 - 10:35:46 PDT)
Re: AMBER: name error
David A. Case
(Thu Jul 08 2004 - 13:54:48 PDT)
AMBER: Namelist problem solved
Vlad Cojocaru
(Wed Jul 07 2004 - 04:09:16 PDT)
AMBER: Molecular dynamic
bybaker.itsa.ucsf.edu
(Wed Jul 07 2004 - 14:12:33 PDT)
RE: AMBER: Molecular dynamic
Ross Walker
(Thu Jul 08 2004 - 10:24:21 PDT)
Re: AMBER: Molecular dynamic
bybaker.itsa.ucsf.edu
(Fri Jul 09 2004 - 15:54:38 PDT)
RE: AMBER: Molecular dynamic
Ross Walker
(Mon Jul 12 2004 - 11:12:53 PDT)
RE: AMBER: Molecular dynamic
Andy Purkiss
(Tue Jul 13 2004 - 02:21:02 PDT)
RE: AMBER: Molecular dynamic
Joseph Nachman
(Tue Jul 13 2004 - 08:21:09 PDT)
AMBER: My strange result of TI.
Chunhu Tan
(Wed Jul 07 2004 - 16:35:19 PDT)
AMBER: correlation in Amber 8
Bimo Ario Tejo
(Thu Jul 08 2004 - 01:14:34 PDT)
AMBER: segmentation fault in leap
anshul.imtech.res.in
(Thu Jul 08 2004 - 14:40:42 PDT)
Re: AMBER: segmentation fault in leap
Guillermo Mulliert Carlín
(Thu Jul 08 2004 - 05:02:05 PDT)
Re: AMBER: segmentation fault in leap
anshul.imtech.res.in
(Thu Jul 08 2004 - 18:17:40 PDT)
AMBER: ptraj
Wen Li
(Thu Jul 08 2004 - 09:06:01 PDT)
RE: AMBER: ptraj
Ross Walker
(Thu Jul 08 2004 - 10:01:43 PDT)
AMBER: ptraj-closestwaters command
Grace Li
(Sat Jul 10 2004 - 09:14:34 PDT)
Re: AMBER: ptraj-closestwaters command
Thomas E. Cheatham, III
(Mon Jul 12 2004 - 13:38:41 PDT)
RE: AMBER: segmentation fault in leap
Ross Walker
(Thu Jul 08 2004 - 10:07:28 PDT)
AMBER: question about Ptraj
jz7.duke.edu
(Thu Jul 08 2004 - 09:32:07 PDT)
RE: AMBER: question about Ptraj
Ross Walker
(Thu Jul 08 2004 - 09:47:28 PDT)
Re: AMBER: question about Ptraj
Thomas E. Cheatham, III
(Thu Jul 08 2004 - 09:56:04 PDT)
AMBER: question about Ptraj - AND OR
james tomomi macdonald
(Mon Jul 12 2004 - 08:06:59 PDT)
Re: AMBER: question about Ptraj - AND OR
Thomas E. Cheatham, III
(Mon Jul 12 2004 - 08:15:13 PDT)
Re: AMBER: question about Ptraj - AND OR
Herr/Señor/Monsieur/Mister Gregory
(Mon Jul 12 2004 - 09:15:47 PDT)
AMBER: weird box expansion
Herbert Georg
(Thu Jul 08 2004 - 09:57:57 PDT)
Re: AMBER: weird box expansion
Thomas E. Cheatham, III
(Thu Jul 08 2004 - 10:06:57 PDT)
Re: AMBER: weird box expansion
Herbert Georg
(Thu Jul 08 2004 - 10:38:01 PDT)
AMBER: problems with mdcrd
Carsten Detering
(Thu Jul 08 2004 - 10:16:04 PDT)
RE: AMBER: problems with mdcrd
Ross Walker
(Thu Jul 08 2004 - 10:32:04 PDT)
RE: AMBER: problems with mdcrd
Ross Walker
(Thu Jul 08 2004 - 12:54:08 PDT)
RE: AMBER: charge problem in minimization
Ross Walker
(Thu Jul 08 2004 - 10:40:56 PDT)
AMBER: parameter development for nucleotide analogues
Vlad Cojocaru
(Thu Jul 08 2004 - 10:49:42 PDT)
AMBER: namelist problem solved
Vlad Cojocaru
(Thu Jul 08 2004 - 10:50:10 PDT)
Re: AMBER: charge problem in minimization
David A. Case
(Thu Jul 08 2004 - 13:54:54 PDT)
AMBER: Problem with sander - Error on Open
Mike
(Thu Jul 08 2004 - 14:38:37 PDT)
RE: AMBER: Problem with sander - Error on Open
Ross Walker
(Thu Jul 08 2004 - 15:15:04 PDT)
RE: AMBER: Problem with sander - Error on Open
Mike
(Thu Jul 08 2004 - 18:57:43 PDT)
RE: AMBER: Problem with sander - Error on Open
Thomas E. Cheatham, III
(Thu Jul 08 2004 - 19:18:10 PDT)
AMBER: how to calculate E-pot from restart file?
J. Zhang, Dr
(Thu Jul 08 2004 - 20:13:44 PDT)
Re: AMBER: how to calculate E-pot from restart file?
David A. Case
(Thu Jul 08 2004 - 21:07:49 PDT)
AMBER: execution time
cailliez
(Fri Jul 09 2004 - 02:50:25 PDT)
RE: AMBER: execution time
Ross Walker
(Fri Jul 09 2004 - 11:52:08 PDT)
AMBER: cys protecting group parameters
Stefano.Pieraccini.unimi.it
(Fri Jul 09 2004 - 06:48:36 PDT)
AMBER: cys protecting groups parameters
Stefano.Pieraccini.unimi.it
(Fri Jul 09 2004 - 05:41:20 PDT)
AMBER: Setup for parallel computing
fangyu liang
(Fri Jul 09 2004 - 10:00:32 PDT)
Re: AMBER: Setup for parallel computing
Stef
(Sat Jul 10 2004 - 14:14:56 PDT)
Re: AMBER: Setup for parallel computing
fangyu liang
(Sat Jul 10 2004 - 16:10:19 PDT)
AMBER: Disulfide bond command
bybaker.itsa.ucsf.edu
(Fri Jul 09 2004 - 11:16:13 PDT)
RE: AMBER: Disulfide bond command
Ross Walker
(Fri Jul 09 2004 - 11:27:13 PDT)
Re: AMBER: Disulfide bond command
bybaker.itsa.ucsf.edu
(Fri Jul 09 2004 - 11:51:46 PDT)
AMBER: MD simulation : problem
sachin patil
(Fri Jul 09 2004 - 22:08:15 PDT)
RE: AMBER: MD simulation : problem
Ross Walker
(Fri Jul 09 2004 - 22:35:14 PDT)
RE: AMBER: MD simulation : problem
sachin patil
(Sun Jul 11 2004 - 08:08:13 PDT)
RE: AMBER: MD simulation : problem
Ross Walker
(Sun Jul 11 2004 - 17:41:11 PDT)
RE: AMBER: MD simulation : problem
sachin patil
(Sun Jul 11 2004 - 21:53:51 PDT)
RE: AMBER: MD simulation : problem
Ross Walker
(Mon Jul 12 2004 - 10:55:33 PDT)
RE: AMBER: MD simulation : problem :THANK YOU
sachin patil
(Tue Jul 13 2004 - 07:51:28 PDT)
AMBER: About the calculation of non-bond list
Wu Lei
(Sat Jul 10 2004 - 07:21:57 PDT)
AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Sat Jul 10 2004 - 08:30:15 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Mark Williamson
(Sat Jul 10 2004 - 10:54:56 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Sat Jul 10 2004 - 22:04:35 PDT)
RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Ross Walker
(Sun Jul 11 2004 - 11:38:49 PDT)
RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Mark Williamson
(Sun Jul 11 2004 - 13:52:45 PDT)
RE: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Scott Brozell
(Mon Jul 12 2004 - 11:30:39 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Tue Jul 13 2004 - 02:46:57 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Tue Jul 13 2004 - 02:52:06 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Mon Jul 12 2004 - 02:36:36 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
Jiten
(Sat Jul 10 2004 - 22:24:27 PDT)
Re: AMBER: Problem amber8 compilation in Opteron(Linux) with PGI-workstation compiler
David A. Case
(Sat Jul 10 2004 - 20:46:57 PDT)
AMBER: Rigid counteranion during MD !!
Jiten
(Sun Jul 11 2004 - 01:26:35 PDT)
Re: AMBER: Rigid counteranion during MD !!
Jiten
(Sun Jul 11 2004 - 07:51:48 PDT)
AMBER: solvation free energy
hj zou
(Sat Jul 10 2004 - 23:16:19 PDT)
Re: AMBER: solvation free energy
Ray Luo
(Sun Jul 11 2004 - 19:25:44 PDT)
Re: Re: AMBER: xleap problem
hj zou
(Sat Jul 10 2004 - 23:16:19 PDT)
Re: AMBER: xleap problem
scopio
(Mon Jul 12 2004 - 07:09:47 PDT)
Re: Re: AMBER: xleap problem
hj zou
(Mon Jul 12 2004 - 07:56:55 PDT)
AMBER: How to apply OPLS force field?
Wu Lei
(Tue Jul 13 2004 - 20:23:04 PDT)
Re: AMBER: How to apply OPLS force field?
mcpreto.fc.up.pt
(Wed Jul 14 2004 - 06:26:04 PDT)
Re: AMBER: How to apply OPLS force field?
Sichun Yang
(Wed Jul 14 2004 - 09:21:41 PDT)
Re: AMBER: How to apply OPLS force field?
David A. Case
(Wed Jul 14 2004 - 09:29:59 PDT)
Re: AMBER: How to apply OPLS force field?
Wu Lei
(Wed Jul 14 2004 - 21:12:50 PDT)
RE: AMBER: How to apply OPLS force field?
Ross Walker
(Wed Jul 14 2004 - 21:20:58 PDT)
Re: AMBER: How to apply OPLS force field?
Wu Lei
(Thu Jul 15 2004 - 00:45:31 PDT)
Re: AMBER: How to apply OPLS force field?
David A. Case
(Thu Jul 15 2004 - 10:04:22 PDT)
RE: AMBER: How to apply OPLS force field?
Bill Ross
(Thu Jul 15 2004 - 09:08:22 PDT)
AMBER:
hj zou
(Sat Jul 10 2004 - 23:16:17 PDT)
AMBER: solvation free energy
hj zou
(Fri Jul 09 2004 - 00:38:39 PDT)
Re: AMBER: solvation free energy
Qizhi Cui
(Mon Jul 19 2004 - 10:32:17 PDT)
AMBER: Fe parameter
hj zou
(Mon Jul 12 2004 - 00:09:29 PDT)
Re: AMBER: Fe parameter
Wu Lei
(Mon Jul 12 2004 - 00:51:18 PDT)
Re: AMBER: Fe parameter
scopio
(Mon Jul 12 2004 - 07:18:52 PDT)
RE: AMBER: Fe parameter
Ross Walker
(Mon Jul 12 2004 - 11:19:23 PDT)
AMBER: Problems with CPU scaling on cluster
Your Name
(Mon Jul 12 2004 - 01:12:48 PDT)
RE: AMBER: Problems with CPU scaling on cluster
Ross Walker
(Mon Jul 12 2004 - 11:38:27 PDT)
RE: AMBER: Problems with CPU scaling on cluster
Ross Walker
(Thu Jul 15 2004 - 11:48:15 PDT)
Re: AMBER: Problems with CPU scaling on cluster
David E. Konerding
(Fri Jul 16 2004 - 08:46:01 PDT)
AMBER: RNA sequence with DNA backbone?
Arvind
(Mon Jul 12 2004 - 04:26:36 PDT)
Re: AMBER: RNA sequence with DNA backbone?
David A. Case
(Mon Jul 12 2004 - 13:35:43 PDT)
Re: AMBER: RNA sequence with DNA backbone?
Arvind
(Wed Jul 14 2004 - 03:50:29 PDT)
Re: AMBER: RNA sequence with DNA backbone?
Vlad Cojocaru
(Wed Jul 14 2004 - 04:09:13 PDT)
AMBER: what is averaged RMS fluctuation?
jz7.duke.edu
(Mon Jul 12 2004 - 09:17:30 PDT)
RE: AMBER: what is averaged RMS fluctuation?
Ross Walker
(Mon Jul 12 2004 - 11:51:47 PDT)
RE: AMBER: what is averaged RMS fluctuation?
jz7.duke.edu
(Mon Jul 12 2004 - 12:59:26 PDT)
RE: AMBER: what is averaged RMS fluctuation?
Thomas E. Cheatham, III
(Mon Jul 12 2004 - 13:28:21 PDT)
Re: AMBER: what is averaged RMS fluctuation?
Carlos Simmerling
(Mon Jul 12 2004 - 13:37:13 PDT)
RE: AMBER: what is averaged RMS fluctuation?
Ross Walker
(Mon Jul 12 2004 - 13:40:23 PDT)
AMBER: question about ptraj
jz7.duke.edu
(Wed Jul 21 2004 - 13:00:01 PDT)
Re: AMBER: question about ptraj
Guanglei Cui
(Wed Jul 21 2004 - 13:32:29 PDT)
AMBER: cut offs in amber?
Grace Li
(Wed Jul 21 2004 - 13:47:43 PDT)
RE: AMBER: cut offs in amber?
Ross Walker
(Wed Jul 21 2004 - 14:05:02 PDT)
RE: AMBER: cut offs in amber?
Grace Li
(Wed Jul 21 2004 - 14:20:40 PDT)
Re: AMBER: cut offs in amber?
Carlos Simmerling
(Wed Jul 21 2004 - 14:32:18 PDT)
RE: AMBER: cut offs in amber?
Ross Walker
(Wed Jul 21 2004 - 14:39:47 PDT)
RE: AMBER: cut offs in amber?
Grace Li
(Wed Jul 21 2004 - 15:03:05 PDT)
RE: AMBER: cut offs in amber?
Ross Walker
(Wed Jul 21 2004 - 15:10:09 PDT)
AMBER: About the free energy difference in vacuum with GIBBS.
Chunhu Tan
(Mon Jul 12 2004 - 15:34:35 PDT)
Re: AMBER: About the free energy difference in vacuum with GIBBS.
David A. Case
(Wed Jul 14 2004 - 13:51:38 PDT)
AMBER:
Jiten
(Tue Jul 13 2004 - 02:25:53 PDT)
Re: AMBER:
Carlos Simmerling
(Tue Jul 13 2004 - 04:59:08 PDT)
AMBER: Angle restraint during MD
Jiten
(Tue Jul 13 2004 - 02:28:14 PDT)
Re: AMBER: Angle restraint during MD
Carlos Simmerling
(Tue Jul 13 2004 - 05:00:42 PDT)
Re: AMBER: Angle restraint during MD
Jiten
(Tue Jul 13 2004 - 09:21:28 PDT)
Re: AMBER: Angle restraint during MD
Carlos Simmerling
(Tue Jul 13 2004 - 10:47:16 PDT)
Re: AMBER: Angle restraint during MD
Jiten
(Tue Jul 13 2004 - 22:51:42 PDT)
Re: AMBER: Angle restraint during MD
Carlos Simmerling
(Wed Jul 14 2004 - 06:39:38 PDT)
Re: AMBER: Angle restraint during MD and namelist problem in amber8
Jiten
(Wed Jul 14 2004 - 09:13:38 PDT)
Re: AMBER: Angle restraint during MD and namelist problem in amber8
Thomas E. Cheatham, III
(Wed Jul 14 2004 - 09:22:26 PDT)
Re: AMBER: solvate proteins in xleap/amber8
Ting Wang
(Tue Jul 13 2004 - 05:23:51 PDT)
AMBER: Use of ibelly with nmode analysis
steven.j.enoch.gsk.com
(Tue Jul 13 2004 - 06:30:30 PDT)
Re: AMBER: Use of ibelly with nmode analysis
David A. Case
(Tue Jul 13 2004 - 09:24:27 PDT)
AMBER: torsion scan
Guanglei Cui
(Tue Jul 13 2004 - 08:18:32 PDT)
Re: AMBER: torsion scan
Furse, Kristina Elisabet
(Tue Jul 13 2004 - 10:37:35 PDT)
Re: AMBER: torsion scan
David A. Case
(Tue Jul 13 2004 - 13:47:00 PDT)
Re: AMBER: torsion scan
Guanglei Cui
(Tue Jul 13 2004 - 14:12:50 PDT)
AMBER: (no subject)
anshul.imtech.res.in
(Tue Jul 13 2004 - 20:40:08 PDT)
RE: AMBER: (no subject)
Ross Walker
(Tue Jul 13 2004 - 10:32:22 PDT)
RE: AMBER: (no subject)
Ross Walker
(Wed Jul 14 2004 - 11:33:38 PDT)
RE: AMBER: (no subject)
FyD
(Wed Jul 14 2004 - 12:30:04 PDT)
AMBER: antechamber
Xin Hu
(Thu Jul 15 2004 - 11:03:44 PDT)
RE: AMBER: antechamber
Ross Walker
(Thu Jul 15 2004 - 11:21:44 PDT)
Re: AMBER: antechamber
Xin Hu
(Thu Jul 15 2004 - 13:57:09 PDT)
Re: AMBER: antechamber
David A. Case
(Thu Jul 15 2004 - 16:30:26 PDT)
Re: AMBER: antechamber
Xin Hu
(Thu Jul 15 2004 - 19:51:26 PDT)
Re: AMBER: antechamber
David A. Case
(Fri Jul 16 2004 - 09:16:14 PDT)
Re: AMBER: antechamber
Bill Ross
(Fri Jul 16 2004 - 10:48:07 PDT)
AMBER: ptraj
Wen Li
(Wed Jul 14 2004 - 14:07:11 PDT)
Re: AMBER: (no subject)
David A. Case
(Fri Jul 30 2004 - 13:42:15 PDT)
AMBER: Parameter generation from RESP charges
anshul.imtech.res.in
(Tue Jul 13 2004 - 21:02:07 PDT)
Re: AMBER: Molecular dynamic & Acknowledgement
bybaker.itsa.ucsf.edu
(Tue Jul 13 2004 - 11:20:50 PDT)
AMBER: anisotropic scaling
Xiang, Tian-Xiang
(Tue Jul 13 2004 - 12:12:32 PDT)
RE: AMBER: anisotropic scaling
Ross Walker
(Tue Jul 13 2004 - 12:39:05 PDT)
Re: AMBER: anisotropic scaling
David A. Case
(Tue Jul 13 2004 - 13:43:02 PDT)
Re: AMBER: Implicit MD problem
Carlos Simmerling
(Wed Jul 14 2004 - 06:42:18 PDT)
Re: AMBER: Implicit MD problem
David A. Case
(Wed Jul 14 2004 - 09:29:47 PDT)
Re: AMBER: Implicit MD problem
Carlos Simmerling
(Wed Jul 14 2004 - 09:53:31 PDT)
AMBER: Problem with divcon - increasing MXATTS?
steven.j.enoch.gsk.com
(Wed Jul 14 2004 - 08:33:38 PDT)
Re: AMBER: Problem with divcon - increasing MXATTS?
Kennie Merz
(Wed Jul 14 2004 - 09:01:54 PDT)
Re: AMBER: Problem with divcon - increasing MXATTS?
steven.j.enoch.gsk.com
(Wed Jul 14 2004 - 09:45:54 PDT)
Re: AMBER: Problem with divcon - increasing MXATTS?
Kennie Merz
(Wed Jul 14 2004 - 10:03:32 PDT)
RE: AMBER: Problem with divcon - increasing MXATTS?
Ross Walker
(Wed Jul 14 2004 - 11:13:19 PDT)
AMBER: Enthalpy of solvent-solute vanderWaals
Scott
(Wed Jul 14 2004 - 12:56:45 PDT)
AMBER: tleap - FATAL error
Sivanesan Dakshanamurthy
(Wed Jul 14 2004 - 14:28:41 PDT)
Re: AMBER: tleap - FATAL error
Scott Brozell
(Wed Jul 14 2004 - 14:44:41 PDT)
AMBER: Normal mode calculation with periodic boundary condition
Johnson Agbo
(Wed Jul 14 2004 - 22:15:09 PDT)
Re: AMBER: Normal mode calculation with periodic boundary condition
David A. Case
(Thu Jul 15 2004 - 10:04:07 PDT)
AMBER: announcing normal mode analysis web server ElNemo
Karsten Suhre
(Thu Jul 15 2004 - 01:21:07 PDT)
AMBER: Correl in Amber8: Diagonal elements not 1?
Bimo Ario Tejo
(Thu Jul 15 2004 - 04:47:43 PDT)
Re: AMBER: xleap solvatebox/oct problem
Jiten
(Thu Jul 15 2004 - 08:18:59 PDT)
Re: AMBER: xleap solvatebox/oct problem
David A. Case
(Thu Jul 15 2004 - 10:02:11 PDT)
Re: AMBER: xleap solvatebox/oct problem
Jiten
(Fri Jul 16 2004 - 02:07:09 PDT)
AMBER: Problems with amber8 and pgf90
Marc Perea
(Thu Jul 15 2004 - 03:30:36 PDT)
Re: AMBER: Problems with amber8 and pgf90
Scott Brozell
(Thu Jul 15 2004 - 09:23:44 PDT)
AMBER: pH effect on protein folding
Rukman Hertadi
(Thu Jul 15 2004 - 19:00:54 PDT)
Re: AMBER: pH effect on protein folding
Bimo Ario Tejo
(Thu Jul 15 2004 - 20:34:39 PDT)
AMBER: Is it a bug?(in prep file opls_unict.in)
Wu Lei
(Thu Jul 15 2004 - 20:44:09 PDT)
Re: AMBER: Is it a bug?(in prep file opls_unict.in)
David A. Case
(Fri Jul 16 2004 - 09:27:41 PDT)
Re: AMBER: Is it a bug?(in prep file opls_unict.in)
Wu Lei
(Fri Jul 16 2004 - 22:15:16 PDT)
Re: AMBER: Is it a bug?(in prep file opls_unict.in)
David A. Case
(Wed Jul 21 2004 - 01:52:22 PDT)
AMBER: Amber8: Vlimit problem again
Yuhui Cheng
(Thu Jul 15 2004 - 19:34:58 PDT)
Re: AMBER: Amber8: Vlimit problem again
German Sciaini
(Fri Jul 16 2004 - 06:12:59 PDT)
Re: AMBER: Amber8: Vlimit problem again
David A. Case
(Fri Jul 16 2004 - 09:26:06 PDT)
Re: AMBER: Amber8: Vlimit problem again
Yuhui Cheng
(Wed Jul 21 2004 - 16:44:09 PDT)
RE: AMBER: Amber8: Vlimit problem again
Ross Walker
(Wed Jul 21 2004 - 16:55:59 PDT)
AMBER: NB pairs exceeds?
Chen
(Fri Jul 16 2004 - 00:35:16 PDT)
Re: AMBER: NB pairs exceeds?
Wu Lei
(Fri Jul 16 2004 - 01:07:56 PDT)
Re: Re: AMBER: NB pairs exceeds?
Chen
(Fri Jul 16 2004 - 01:40:42 PDT)
Re: Re: AMBER: NB pairs exceeds?
David A. Case
(Fri Jul 16 2004 - 09:23:22 PDT)
Re: Re: AMBER: NB pairs exceeds?
csong.mail.sdu.edu.cn
(Sat Jul 17 2004 - 03:10:23 PDT)
Re: Re: AMBER: NB pairs exceeds?
David A. Case
(Sat Jul 17 2004 - 18:09:22 PDT)
Re: Re: AMBER: NB pairs exceeds?
csong.mail.sdu.edu.cn
(Sun Jul 18 2004 - 01:28:27 PDT)
AMBER: X-CA-CT-X dih. FF param ?
FyD
(Fri Jul 16 2004 - 10:08:26 PDT)
Re: AMBER: X-CA-CT-X dih. FF param ?
Guanglei Cui
(Fri Jul 16 2004 - 10:24:46 PDT)
AMBER: question about production runs
opitz.che.udel.edu
(Fri Jul 16 2004 - 12:42:06 PDT)
AMBER: RESP vs. AM1-BCC charges for isoprene
Oliver Hucke
(Fri Jul 16 2004 - 14:00:57 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Rhonda Torres
(Fri Jul 16 2004 - 14:20:42 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Oliver Hucke
(Fri Jul 16 2004 - 15:49:00 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Carsten Detering
(Fri Jul 16 2004 - 14:33:51 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Carsten Detering
(Fri Jul 16 2004 - 14:37:22 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Ilyas Yildirim
(Fri Jul 16 2004 - 15:36:22 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Joe Harriman
(Sat Jul 17 2004 - 05:44:47 PDT)
RE: AMBER: RESP vs. AM1-BCC charges for isoprene
ajakalian.lav.Boehringer-Ingelheim.com
(Thu Jul 22 2004 - 05:43:16 PDT)
Re: AMBER: RESP vs. AM1-BCC charges for isoprene
Oliver Hucke
(Fri Jul 23 2004 - 10:41:05 PDT)
RE: AMBER: RESP vs. AM1-BCC charges for isoprene
ajakalian.lav.Boehringer-Ingelheim.com
(Mon Jul 26 2004 - 08:09:31 PDT)
AMBER: Cubic Ice
Johnson Agbo
(Fri Jul 16 2004 - 18:08:14 PDT)
AMBER: Amber7 (8):FLUSH--FAILED:: Resource temporarily unavailable
Jean-Christophe Ducom
(Sat Jul 17 2004 - 13:01:47 PDT)
AMBER: Re: Results from RED-II beta
FyD
(Sun Jul 18 2004 - 09:11:41 PDT)
AMBER: vdw energy in minimization
anshul.imtech.res.in
(Mon Jul 19 2004 - 08:11:17 PDT)
Re: AMBER: vdw energy in minimization
carlos
(Mon Jul 19 2004 - 05:13:30 PDT)
Re: AMBER: vdw energy in minimization
anshul.imtech.res.in
(Mon Jul 19 2004 - 20:44:30 PDT)
Re: AMBER: vdw energy in minimization
Carlos Simmerling
(Mon Jul 19 2004 - 11:47:21 PDT)
AMBER: Weird compiling problem in Amber 8
echanco.uci.edu
(Sun Jul 18 2004 - 22:51:29 PDT)
Re: AMBER: Weird compiling problem in Amber 8
fangyu liang
(Sun Jul 18 2004 - 23:30:22 PDT)
Re: AMBER: Weird compiling problem in Amber 8
Scott Brozell
(Mon Jul 19 2004 - 10:08:54 PDT)
Re: AMBER: Weird compiling problem in Amber 8
Ray Luo
(Sun Jul 18 2004 - 22:34:03 PDT)
AMBER: .lib file error in tleap
anita pachaimuthu
(Mon Jul 19 2004 - 10:19:19 PDT)
Re: AMBER: .lib file error in tleap
Sébastien Osborne
(Mon Jul 19 2004 - 11:15:11 PDT)
AMBER: antechamber - missing improper torsions
O. Hucke
(Mon Jul 19 2004 - 11:58:39 PDT)
Re: AMBER: antechamber - missing improper torsions
German Sciaini
(Tue Jul 20 2004 - 06:04:17 PDT)
RE: AMBER: antechamber - missing improper torsions
Junmei Wang
(Wed Jul 21 2004 - 09:11:04 PDT)
AMBER: A problem regarding constant pH calculation in Amber 8
Yongzhi Chen
(Mon Jul 19 2004 - 18:54:43 PDT)
AMBER: PB Bomb in pb_reslist(): maxnbr too small
steven.j.enoch.gsk.com
(Tue Jul 20 2004 - 06:00:59 PDT)
Re: AMBER: PB Bomb in pb_reslist(): maxnbr too small
Ray Luo
(Mon Jul 19 2004 - 05:22:26 PDT)
AMBER: antechamber - improper torsions
Oliver Hucke
(Tue Jul 20 2004 - 09:23:02 PDT)
AMBER: FW: missing bondi radii of Br and F for surface area calculation
S. Frank Yan
(Tue Jul 20 2004 - 10:30:13 PDT)
AMBER: about GLYCAM prep files in AMBER
Ozlem Demir
(Tue Jul 20 2004 - 10:34:07 PDT)
AMBER: Problem with sander tutorial.
tarek mahfouz
(Tue Jul 20 2004 - 12:09:44 PDT)
RE: AMBER: Problem with sander tutorial.
Ross Walker
(Tue Jul 20 2004 - 13:16:28 PDT)
RE: AMBER: Problem with sander tutorial.
tarek mahfouz
(Thu Jul 22 2004 - 09:59:42 PDT)
RE: AMBER: Problem with sander tutorial.
Ross Walker
(Thu Jul 22 2004 - 13:57:20 PDT)
RE: AMBER: Problem with sander tutorial.
Scott
(Thu Jul 22 2004 - 19:08:19 PDT)
AMBER: Bondi radii for BR and F in mm_pbsa calculation
S. Frank Yan
(Tue Jul 20 2004 - 16:01:03 PDT)
Re: AMBER: Bondi radii for BR and F in mm_pbsa calculation
Rhonda Torres
(Tue Jul 20 2004 - 17:23:10 PDT)
AMBER: Leap could not find atom type CK
吴磊
(Tue Jul 20 2004 - 21:35:54 PDT)
AMBER: Re: Re: AMBER: Is it a bug?(in prep file opls_unict.in)
吴磊
(Wed Jul 21 2004 - 03:59:13 PDT)
Re: AMBER: Re: Re: AMBER: Is it a bug?(in prep file opls_unict.in)
David A. Case
(Wed Jul 21 2004 - 06:32:44 PDT)
AMBER: atom out of bounds
Venkata S Koppuravuri
(Wed Jul 21 2004 - 06:25:25 PDT)
AMBER: Co-ordination error while running tleap
anita pachaimuthu
(Wed Jul 21 2004 - 08:12:12 PDT)
AMBER: What happen when sander reads charge increments from cpin file?
Yongzhi Chen
(Wed Jul 21 2004 - 13:24:51 PDT)
RE: AMBER: What happen when sander reads charge increments from cpin file?
Ross Walker
(Wed Jul 21 2004 - 13:41:45 PDT)
RE: AMBER: What happen when sander reads charge increments from cpin file?
Yongzhi Chen
(Wed Jul 21 2004 - 14:59:40 PDT)
AMBER: amparm
Vincent Bisetty
(Wed Jul 21 2004 - 13:37:39 PDT)
RE: AMBER: amparm
Ross Walker
(Wed Jul 21 2004 - 14:11:29 PDT)
AMBER: sander tutorial
mathew k varghese
(Thu Jul 22 2004 - 05:16:33 PDT)
Re: AMBER: sander tutorial
Carlos Simmerling
(Thu Jul 22 2004 - 05:33:08 PDT)
AMBER: mutation of atoms
Nelson Fonseca
(Thu Jul 22 2004 - 05:41:22 PDT)
AMBER: found unknown atflg PB
Scott
(Thu Jul 22 2004 - 06:38:33 PDT)
Re: AMBER: found unknown atflg PB
Holger Gohlke
(Thu Jul 22 2004 - 07:56:38 PDT)
AMBER: Xleap crash, problem with residue bonding
opitz.che.udel.edu
(Thu Jul 22 2004 - 07:24:35 PDT)
RE: AMBER: Xleap crash, problem with residue bonding
Ross Walker
(Thu Jul 22 2004 - 14:31:22 PDT)
RE: AMBER: Xleap crash, problem with residue bonding
Bill Ross
(Thu Jul 22 2004 - 14:55:58 PDT)
Re: AMBER: Xleap crash, problem with residue bonding
opitz.che.udel.edu
(Mon Jul 26 2004 - 08:39:51 PDT)
AMBER: user force
Myunggi Yi
(Thu Jul 22 2004 - 10:00:16 PDT)
Re: AMBER: user force
Furse, Kristina Elisabet
(Thu Jul 22 2004 - 14:07:46 PDT)
Re: AMBER: user force
myunggi.csit.fsu.edu
(Thu Jul 22 2004 - 14:48:28 PDT)
RE: AMBER: user force
Ross Walker
(Thu Jul 22 2004 - 15:08:04 PDT)
RE: AMBER: user force
myunggi.csit.fsu.edu
(Thu Jul 22 2004 - 15:25:50 PDT)
Re: AMBER: user force
Carlos Simmerling
(Thu Jul 22 2004 - 15:28:42 PDT)
RE: AMBER: user force
Ross Walker
(Thu Jul 22 2004 - 15:40:16 PDT)
RE: AMBER: user force
myunggi.csit.fsu.edu
(Thu Jul 22 2004 - 16:26:14 PDT)
Re: AMBER: user force
Carlos Simmerling
(Fri Jul 23 2004 - 04:47:17 PDT)
Re: AMBER: user force
Bill Ross
(Thu Jul 22 2004 - 14:57:24 PDT)
AMBER: (no subject)
myunggi.csit.fsu.edu
(Thu Jul 22 2004 - 10:10:09 PDT)
AMBER: atom out of bounds (fwd)
Venkata S Koppuravuri
(Thu Jul 22 2004 - 12:52:13 PDT)
RE: AMBER: atom out of bounds (fwd)
Ross Walker
(Thu Jul 22 2004 - 13:54:52 PDT)
AMBER: Ewald parameter range
Johnson Agbo
(Thu Jul 22 2004 - 17:16:08 PDT)
Re: AMBER: Ewald parameter range
David A. Case
(Fri Jul 23 2004 - 01:53:50 PDT)
Re: AMBER: Ewald parameter range
Johnson Agbo
(Fri Jul 23 2004 - 11:00:12 PDT)
AMBER: sander : constraints to conserve hydrogen bonds
sachin patil
(Thu Jul 22 2004 - 21:15:04 PDT)
Re: AMBER: sander : constraints to conserve hydrogen bonds
Jiten
(Thu Jul 22 2004 - 22:58:15 PDT)
Re: AMBER: sander : constraints to conserve hydrogen bonds
Carlos Simmerling
(Fri Jul 23 2004 - 05:08:43 PDT)
AMBER: pmemd.
Osman Gani
(Fri Jul 23 2004 - 10:09:55 PDT)
Re: AMBER: pmemd.
Robert Duke
(Fri Jul 23 2004 - 10:46:48 PDT)
AMBER: parametrization problem
Carsten Detering
(Fri Jul 23 2004 - 11:16:13 PDT)
RE: AMBER: parametrization problem
Ross Walker
(Fri Jul 23 2004 - 12:32:15 PDT)
AMBER: about RDF calculation in action.c
Grace Li
(Fri Jul 23 2004 - 13:39:07 PDT)
Re: AMBER: parametrization problem
Carsten Detering
(Fri Jul 23 2004 - 13:38:59 PDT)
Re: AMBER: parametrization problem
Carsten Detering
(Fri Jul 23 2004 - 13:33:01 PDT)
AMBER: atoms not in residue templates
anshul.imtech.res.in
(Sat Jul 24 2004 - 08:19:42 PDT)
RE: AMBER: atoms not in residue templates
Ross Walker
(Sat Jul 24 2004 - 08:05:36 PDT)
AMBER: erroe in installing amber8
anshul.imtech.res.in
(Sat Jul 24 2004 - 10:11:02 PDT)
Re: AMBER: erroe in installing amber8
David A. Case
(Sat Jul 24 2004 - 01:40:06 PDT)
Re: AMBER: erroe in installing amber8
Scott Brozell
(Sun Jul 25 2004 - 17:58:58 PDT)
AMBER: about the parameter of the cystein pair in MD simulation
Yuhui Cheng
(Sun Jul 25 2004 - 19:01:13 PDT)
Re: AMBER: about the parameter of the cystein pair in MD simulation
Thomas E. Cheatham, III
(Sun Jul 25 2004 - 20:07:44 PDT)
AMBER: about running ptraj in amber8
jz7.duke.edu
(Mon Jul 26 2004 - 07:04:33 PDT)
RE: AMBER: about running ptraj in amber8
Ross Walker
(Mon Jul 26 2004 - 09:22:36 PDT)
RE: AMBER: about running ptraj in amber8
jz7.duke.edu
(Mon Jul 26 2004 - 09:30:42 PDT)
AMBER: about running ptraj in ambber8 (re-post)
jz7.duke.edu
(Mon Jul 26 2004 - 13:47:52 PDT)
AMBER: amber compilation
Livadaru, Lucian
(Mon Jul 26 2004 - 13:15:50 PDT)
Re: AMBER: amber compilation
Viktor Hornak
(Mon Jul 26 2004 - 13:47:33 PDT)
AMBER: Temperature Regulation
Johnson Agbo
(Mon Jul 26 2004 - 21:40:44 PDT)
Re: AMBER: Temperature Regulation
Andreas Svrcek-Seiler
(Tue Jul 27 2004 - 07:09:51 PDT)
Re: AMBER: Temperature Regulation
David A. Case
(Tue Jul 27 2004 - 08:24:31 PDT)
AMBER: mm_pbsa Abmer8 example
John
(Tue Jul 27 2004 - 03:38:50 PDT)
AMBER: question on simulated annealing
Venkata S Koppuravuri
(Tue Jul 27 2004 - 11:21:52 PDT)
Re: AMBER: question on simulated annealing
Carlos Simmerling
(Tue Jul 27 2004 - 11:28:27 PDT)
Re: AMBER: question on simulated annealing
David A. Case
(Tue Jul 27 2004 - 12:26:06 PDT)
AMBER: Question on Clustering Analysis
Chen, Ya
(Tue Jul 27 2004 - 11:26:30 PDT)
AMBER: about correlation calculation in ptraj
jz7.duke.edu
(Tue Jul 27 2004 - 14:20:53 PDT)
AMBER: animation?
S. Frank Yan
(Tue Jul 27 2004 - 23:29:51 PDT)
Re: AMBER: animation?
Guanglei Cui
(Wed Jul 28 2004 - 06:20:12 PDT)
Re: AMBER: animation?
aldo jongejan
(Wed Jul 28 2004 - 05:36:21 PDT)
AMBER: PB bomb in pb_saarc
steven.j.enoch.gsk.com
(Wed Jul 28 2004 - 01:26:38 PDT)
Re: AMBER: PB bomb in pb_saarc
steven.j.enoch.gsk.com
(Wed Jul 28 2004 - 01:49:20 PDT)
Re: AMBER: simulated annealing
Carlos Simmerling
(Wed Jul 28 2004 - 05:17:55 PDT)
Re: AMBER: simulated annealing
Abd Ghani Bin Abd Aziz
(Wed Jul 28 2004 - 06:22:37 PDT)
AMBER: simulated annealing..
Abd Ghani Bin Abd Aziz
(Wed Jul 28 2004 - 06:45:55 PDT)
Re: AMBER: simulated annealing..
Carlos Simmerling
(Wed Jul 28 2004 - 07:06:01 PDT)
AMBER: tleap: automatically identify and connect disulfide bonds?
Raik Grünberg
(Wed Jul 28 2004 - 10:27:31 PDT)
Re: AMBER: tleap: automatically identify and connect disulfide bonds?
Scott Brozell
(Wed Jul 28 2004 - 13:22:52 PDT)
AMBER: ptraj: load crd without hydrogen (i.e. missing parm file)
Raik Grünberg
(Thu Jul 29 2004 - 03:34:44 PDT)
Re: AMBER: tleap: automatically identify and connect disulfide bonds?
Austin B. Yongye
(Thu Jul 29 2004 - 06:13:46 PDT)
AMBER: Re: AMBER: Temperature Regulation
Dawsonzhu.aol.com
(Wed Jul 28 2004 - 17:44:56 PDT)
AMBER: NSPSOL in parm file
Sichun Yang
(Wed Jul 28 2004 - 21:14:01 PDT)
Re: AMBER: NSPSOL in parm file
David A. Case
(Thu Jul 29 2004 - 08:07:54 PDT)
AMBER: umbrella sampling
tang kwa
(Thu Jul 29 2004 - 10:25:00 PDT)
Re: AMBER: umbrella sampling
David A. Case
(Thu Jul 29 2004 - 11:19:13 PDT)
AMBER: Re: constant pH calculation in Amber8
John Mongan
(Thu Jul 29 2004 - 14:40:36 PDT)
AMBER:
csong.mail.sdu.edu.cn
(Fri Jul 30 2004 - 02:08:40 PDT)
Re: AMBER:
Guanglei Cui
(Fri Jul 30 2004 - 06:39:51 PDT)
Re: AMBER:
David A. Case
(Fri Jul 30 2004 - 08:06:56 PDT)
Re: Re: AMBER:
Chen
(Fri Jul 30 2004 - 20:55:14 PDT)
RE: AMBER:
Ross Walker
(Fri Jul 30 2004 - 08:46:52 PDT)
AMBER: (no subject)
HL Eastwood
(Fri Jul 30 2004 - 08:47:18 PDT)
RE: AMBER: (no subject)
Ross Walker
(Fri Jul 30 2004 - 09:21:33 PDT)
RE: AMBER: (no subject)
HL Eastwood
(Fri Jul 30 2004 - 11:12:34 PDT)
RE: AMBER: (no subject)
Ross Walker
(Fri Jul 30 2004 - 14:09:25 PDT)
AMBER: WHAM program
tang kwa
(Fri Jul 30 2004 - 09:09:02 PDT)
Re: AMBER: WHAM program
David A. Case
(Fri Jul 30 2004 - 10:16:02 PDT)
AMBER: AMBER 6 compilation problems!
Grace Li
(Fri Jul 30 2004 - 10:17:39 PDT)
Re: AMBER: AMBER 6 compilation problems!
Carlos Simmerling
(Fri Jul 30 2004 - 10:26:59 PDT)
RE: AMBER: AMBER 6 compilation problems!
Ross Walker
(Fri Jul 30 2004 - 10:30:54 PDT)
RE: AMBER: AMBER 6 compilation problems!
Grace Li
(Fri Jul 30 2004 - 11:52:15 PDT)
Re: AMBER: AMBER 6 compilation problems!
Carlos Simmerling
(Fri Jul 30 2004 - 12:03:31 PDT)
Re: AMBER: AMBER 6 compilation problems!
Grace Li
(Fri Jul 30 2004 - 13:42:03 PDT)
AMBER: Imaging problem
Steve Seibold
(Fri Jul 30 2004 - 12:05:12 PDT)
Re: AMBER: Imaging problem
Thomas E. Cheatham, III
(Fri Jul 30 2004 - 13:41:45 PDT)
Re: AMBER: lib file
David A. Case
(Fri Jul 30 2004 - 13:48:50 PDT)
Re: AMBER: lib file
Furse, Kristina Elisabet
(Fri Jul 30 2004 - 14:38:37 PDT)
Last message date
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Sat Jul 31 2004 - 05:53:00 PDT
Archived on
: Wed Dec 25 2024 - 05:53:23 PST
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